Rsamtools-package	Rsamtools-package
bamDirname<-	BamViews-class
bamExperiment	BamViews-class
bamFlag	ScanBamParam-class
bamFlag<-	ScanBamParam-class
bamIndicies	BamViews-class
bamPaths	BamViews-class
bamRanges	BamViews-class
bamRanges<-	BamViews-class
bamReverseComplement	ScanBamParam-class
bamReverseComplement<-	ScanBamParam-class
bamSamples	BamViews-class
bamSamples<-	BamViews-class
bamSimpleCigar	ScanBamParam-class
bamSimpleCigar<-	ScanBamParam-class
bamTag	ScanBamParam-class
bamTag<-	ScanBamParam-class
BamViews	BamViews-class
BamViews,GRanges-method	BamViews-class
BamViews,missing-method	BamViews-class
BamViews,RangedData-method	BamViews-class
BamViews-class	BamViews-class
bamWhat	ScanBamParam-class
bamWhat<-	ScanBamParam-class
bamWhich	ScanBamParam-class
bamWhich<-	ScanBamParam-class
countBam	scanBam
countBam,BamViews-method	BamViews-class
countBam,character-method	scanBam
dim,BamViews-method	BamViews-class
dimnames,BamViews-method	BamViews-class
dimnames<-,BamViews-method	BamViews-class
filterBam	scanBam
filterBam,character-method	scanBam
indexBam	scanBam
indexBam,character-method	scanBam
names,BamViews-method	BamViews-class
names<-,BamViews-method	BamViews-class
readBamGappedAlignments	readBamGappedAlignments
readBamGappedAlignments,BamViews-method	BamViews-class
readBamGappedAlignments,character-method	readBamGappedAlignments
readPileup	readPileup
readPileup,character-method	readPileup
readPileup,connection-method	readPileup
Rsamtools	Rsamtools-package
scanBam	scanBam
scanBam,BamViews-method	BamViews-class
scanBam,character-method	scanBam
scanBamFlag	ScanBamParam-class
scanBamHeader	scanBam
scanBamHeader,character-method	scanBam
ScanBamParam	ScanBamParam-class
ScanBamParam,GRanges-method	ScanBamParam-class
ScanBamParam,missing-method	ScanBamParam-class
ScanBamParam,RangedData-method	ScanBamParam-class
ScanBamParam,RangesList-method	ScanBamParam-class
ScanBamParam-class	ScanBamParam-class
scanBamWhat	ScanBamParam-class
show,BamViews-method	BamViews-class
show,ScanBamParam-method	ScanBamParam-class
[,BamViews,ANY,ANY-method	BamViews-class
[,BamViews,ANY,missing-method	BamViews-class
[,BamViews,missing,ANY-method	BamViews-class
