Find chromosome regions showing common gains/losses

[Package List] [Top]

Documentation for package ‘cghMCR’ version 1.4.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

cghMCR The constructor for the cghMCR class
cghMCR-class Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
colnames,SGOL-method Methods for Function colnames/rownames in Package 'cghMCR'
colnames-methods Methods for Function colnames/rownames in Package 'cghMCR'
getSegments Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments,marrayNorm-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments,marrayRaw-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
gol Class "SGOL" reprents segments of gain or loss across samples
gol,SGOL-method Class "SGOL" reprents segments of gain or loss across samples
MCR Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
MCR,cghMCR-method Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
mergeMCRProbes A function that appends probe ids to a data frame containing MCRs
method,SGOL-method Class "SGOL" reprents segments of gain or loss across samples
plot Class "SGOL" reprents segments of gain or loss across samples
plot,ANY-method Class "SGOL" reprents segments of gain or loss across samples
plot,methods Class "SGOL" reprents segments of gain or loss across samples
plot,SGOL,ANY-method Class "SGOL" reprents segments of gain or loss across samples
plot,SGOL-method Class "SGOL" reprents segments of gain or loss across samples
plot.DNAcopy A function to plot the original data along with the segments identified using segment of DNAcopy.
rownames,SGOL-method Methods for Function colnames/rownames in Package 'cghMCR'
rownames-methods Methods for Function colnames/rownames in Package 'cghMCR'
segData The constructor for the cghMCR class
SGOL Class "SGOL" reprents segments of gain or loss across samples
SGOL-class Class "SGOL" reprents segments of gain or loss across samples
threshold,SGOL-method Class "SGOL" reprents segments of gain or loss across samples
[,SGOL-method Methods for Function colnames/rownames in Package 'cghMCR'
[-methods Methods for Function colnames/rownames in Package 'cghMCR'