DBF                     Density-Based Filtering.
DBFMCL                  The "Density Based Filtering and Markov
                        CLustering" algorithm (DBF-MCL).
DBFMCLresult-class      Class to store DBFMCL results.
MCL                     Invokes the Markov CLustering algorithm (MCL).
RTools4TB_1.1.4-package
                        The RTools4TB package: data mining of public
                        microarray data through connections to the
                        TranscriptomeBrowser database.
annotationList          The keywords used to get information about
                        functional enrichment of transcriptional
                        signatures.
clusterEisen            Performs system call to the Cluster 3.0
                        program.
colorScale              Calibration bar for color images
createGraph4BioC        Creates a graph based on a request to the
                        TrancriptomeBrowser database.
createSignatures4TB     Creates a set of transcriptional signatures
                        from a microarray dataset.
doNormalScore           Normal score transformation of a matrix.
doRankTransformation    Rank transformation of a matrix.
getData4DBFMCL          Fetch an expression matrix from a file or an
                        ExpressionSet object
getExpressionMatrix     A function to fetch an expression matrix from
                        the TranscriptomeBrowser database.
getSignatures           A function to retrieve transcriptional
                        signature IDs from the TranscriptomeBrowser
                        database (TBrowserDB).
getTBInfo               Get information about an experiment or a
                        platform.
heatmapFromCDT          Reads a "cdt" file containing a set of
                        transcriptional signatures and produces
                        heatmaps.
matplotProfiles         An internal plotting function based on the
                        matplot function.
plotGeneExpProfiles     Visualization of transcriptional signature
                        profiles.
writeDBFMCLresult       Writes the results of DBFMCL function onto
                        disk.
