Entry: exfdr
Aliases: exfdr
Keywords: datasets
Description: Example of twilight result
URL: ../../../library/twilight/html/exfdr.html

Entry: expval
Aliases: expval
Keywords: datasets
Description: Example of twilight.pval result
URL: ../../../library/twilight/html/expval.html

Entry: plot.twilight
Aliases: plot.twilight
Keywords: hplot
Description: Plot function for twilight objects
URL: ../../../library/twilight/html/plot.twilight.html

Entry: print.twilight
Aliases: print.twilight
Keywords: print
Description: Print function for twilight objects
URL: ../../../library/twilight/html/print.twilight.html

Entry: twilight
Aliases: twilight
Keywords: nonparametric
Description: Estimation of the local false discovery rate
URL: ../../../library/twilight/html/twilight.html

Entry: twilight.combi
Aliases: twilight.combi
Keywords: datagen
Description: All permutations of a binary vector
URL: ../../../library/twilight/html/twilight.combi.html

Entry: twilight.filtering
Aliases: twilight.filtering
Keywords: datagen
Description: Permutation filtering
URL: ../../../library/twilight/html/twilight.filtering.html

Entry: twilight.getlambda
Aliases: twilight.getlambda
Keywords: internal
Description: Internal function to compute regularization parameter lambda
URL: ../../../library/twilight/html/twilight.getlambda.html

Entry: twilight.getmatrix
Aliases: twilight.getmatrix
Keywords: internal
Description: Internal function to extract the gene expression matrix from an expression set
URL: ../../../library/twilight/html/twilight.getmatrix.html

Entry: twilight.permute.pair
Aliases: twilight.permute.pair
Keywords: datagen
Description: Permutation matrix of paired class labels
URL: ../../../library/twilight/html/twilight.permute.pair.html

Entry: twilight.permute.unpair
Aliases: twilight.permute.unpair
Keywords: datagen
Description: Permutation matrix of unpaired class labels
URL: ../../../library/twilight/html/twilight.permute.unpair.html

Entry: twilight.pval
Aliases: twilight.pval
Keywords: nonparametric
Description: Compute p-values from expression sets
URL: ../../../library/twilight/html/twilight.pval.html

Entry: twilight.teststat
Aliases: twilight.teststat
Keywords: nonparametric
Description: Interface to the test statistics provided within 'twilight'
URL: ../../../library/twilight/html/twilight.teststat.html
