collapse               package:spikeLI               R Documentation

_D_a_t_a _c_o_l_l_a_p_s_e _o_f _a_l_l _c_o_n_c_e_n_t_r_a_t_i_o_n_s _i_n_t_o _a _s_i_n_g_l_e _g_r_a_p_h

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes as input one or more (up to four) probe sets
     of the Latin square spike-in data and produces collapse plots. A
     collapse plot contains data of different concentrations into a
     single graph. The user can compare in how far the data follows the
     predicted Langmuir behavior which is also given in the plot. Two
     models are compared: the basic Langmuir Isotherm and the Langmuir
     Isotherm with hybridization in solution.

_U_s_a_g_e:

     collapse(probe_set, param = "NULL", probes = "NULL", output = "NULL", filename = "NULL")

_A_r_g_u_m_e_n_t_s:

probe_set: This has to take the value of a probe set 

   param: In input one or more probe sets can be given 

  probes: A vector containing the probes  

  output: "PS" output on a postscript file 

filename: the file in which collapses are given 

_A_u_t_h_o_r(_s):

     Delphine Baillon, Paul Leclercq, Sarah Ternisien, Thomas Heim and
     Enrico Carlon

_R_e_f_e_r_e_n_c_e_s:

     E. Carlon and T. Heim, Physica A 362, 433 (2006).

_S_e_e _A_l_s_o:

     'Ivsc', 'IvsDG', 'hgu', 'SPIKE_IN', 'SPIKE_INA', 'SPIKE_INB',
     'SPIKE_INH'

_E_x_a_m_p_l_e_s:

     ## You may display the matched intensities of a Probe-Set according to the Delta-G value
          collapse("1091_at")

     ## You may restrict the value to the Perfect match or mis-matches
          collapse("1091_at","PM")

     ## You may restrict the values risplayed for only a number of probes
          collapse("1091_at",probes=c(1,9))

     ## You may output the graphs to a postscript file
          collapse("1091_at",output="PS",filename="outfile.ps")

     ## You may display up to 4 probe-sets in the same window
          collapse(c("1091_at","37777_at",SPIKE_INA[1:2]))

     ## You can also use the values of the probe-sets contained in one of the Vectors of Human, Bacteria, 
     ## or Artificial Probe-sets
          collapse(SPIKE_INH)

