SOSResult

Description

A result from simulating an SOSExperiment. Contains the time course for each of the model variables: the Species quantities, Compartment sizes, Parameter values, and Reaction rates.

Slots

data:

A "data.frame" containing the time course data. Each row contains the value at a single time point for a single time course. Has the following columns:

sample

A factor, the run number, only exists if there were multiple runs, see SOSDesign.

type

A factor, the SBML element type for the time course, e.g. "species".

id

A factor, the id of the SBML element for the time course.

time

The numeric time value for the time point.

value

The actual numeric value for the time course at that time.

sens:

A "matrix" with results from sensitivity analysis, not yet supported.

Extends

Class "ExperimentResult", directly.

Methods

as.ts

signature(x = "SOSResult"): converts this object to a time course object of class ts. This allows analysis of the results with existing R infrastructure for time course analysis.

compartments

signature(object = "SOSResult"): returns a subset containing only the Compartment size courses.

parameters

signature(object = "SOSResult"): returns a subset containing only the global Parameter value courses.

reactions

signature(object = "SOSResult"): returns a subset containing only the Reaction rate courses.

species

signature(object = "SOSResult"): returns a subset containing only the Species quantity courses.

Author(s)

Michael Lawrence

References

See http://www.tbi.univie.ac.at/~raim/odeSolver/ for more information on the SBML ODE Solver library.

See Also

SOSExperiment for running a simulation and obtaining an instance of this class.