exonContrasts         package:oneChannelGUI         R Documentation

_D_e_f_i_n_i_n_g _t-_t_e_s_t _r_e_g_u_l_a_r_i_z_e_d _p-_v_a_l_u_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function constructs the contrasts as affylmGUI but applied to
     exon-level. It also perfoms Bayes regularization. Raw p-values are
     plotted to see if BH or BY type I error correction can be applied.
     Corrected p-values are saved and used for extraction of
     alternative spliced exons.

_U_s_a_g_e:

     exonContrasts()

_D_e_t_a_i_l_s:

     It is important to note that if multiple contrasts should be
     considered after the calculation of each of them it is essential
     to extract the alternative spliced exons with exonTopTableExtract,
     because everytime exonContrasts is run it overwrites the previous
     results.

_A_u_t_h_o_r(_s):

     Raffaele A Calogero

