printProfiles           package:goProfiles           R Documentation

_P_r_i_n_t _f_u_n_c_t_i_o_n_a_l _p_r_o_f_i_l_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Prints basic functional profiles created with the 'basicProfile'
     instruction. Allows for several formatting operations such as
     truncating long labels,  removing empty categories or choosing
     between absolute or relative frequencies. If several profiles have
     to be printed together they must be first merged using the
     'mergeProfiles' function.

_U_s_a_g_e:

     printProfiles(aProf, aTitle = "Functional Profile", anOnto = NULL, percentage = FALSE, 
           Width=25, emptyCats=FALSE)

_A_r_g_u_m_e_n_t_s:

   aProf: Functional profile to plot

  aTitle: Title for the figures

  anOnto: Ontology (to appear in the title)

percentage: Plot absolute or relative frequencies (not summing to 100)

   Width: Maximum width for the description of GO categories

emptyCats: Set to 'TRUE' if empty categories should appear in the
          profile

_V_a_l_u_e:

     The printout

_A_u_t_h_o_r(_s):

     Alex Sanchez

_E_x_a_m_p_l_e_s:

     data(sampleProfiles)
     printProfiles(basicWelsh01[['MF']],'Functional profiles for Welsh dataset', anOnto='MF', percentage=TRUE)
     printProfiles(basicWelsh01,'Functional profiles for Welsh dataset',anOnto='MF', percentage=TRUE, emptyCats=TRUE)
     merged<-mergeProfilesLists (basicSingh01, basicWelsh01, profNames=c('Welsh','Singh'))
     printProfiles(merged, percentage=TRUE, emptyCats=TRUE)

