Entry: PC-class
Aliases: PC-class [<-,PC-method [,PC-method fc,PC-method tt,PC-method
Keywords: classes
Description: Class "PC" represents the result of a simple pairwise comparison between two groups of arrays
URL: ../../../library/exonmap/html/PC-class.html

Entry: array.subset
Aliases: array.subset array.subset,AffyBatch-method array.subset,ExpressionSet-method
Keywords: misc
Description: Given an expression object get a particular subset of arrays defined by the phenoData
URL: ../../../library/exonmap/html/array.subset.html

Entry: db.local.info
Aliases: db.local.info clear.db.local
Keywords: misc
Description: Display the contents/clear the contents of the local data directory
URL: ../../../library/exonmap/html/db.local.info.html

Entry: details
Aliases: details exon.details transcript.details gene.details
Keywords: misc
Description: Get detailed annotation for exons, transcripts and genes
URL: ../../../library/exonmap/html/details.html

Entry: filters
Aliases: filters exonic intronic intergenic multitarget is.exonic is.intronic is.intergenic is.multitarget select.probewise exclude.probewise
Keywords: misc
Description: Filter vectors of Affymetrix Exon array probeset names according to where they target
URL: ../../../library/exonmap/html/filters.html

Entry: gene.graph
Aliases: gene.graph gene.graph
Keywords: misc
Description: Use the X:Map database to find annotated gene structure and generate a plot
URL: ../../../library/exonmap/html/gene.graph.html

Entry: gene.legend
Aliases: gene.legend
Keywords: misc
Description: Generate a colour bar to use as a legend
URL: ../../../library/exonmap/html/gene.legend.html

Entry: gene.strip
Aliases: gene.strip value.to.colour ps.value
Keywords: misc
Description: Use the X:MAP database to find annotated gene structure and generate a plot for multiple genes
URL: ../../../library/exonmap/html/gene.strip.html

Entry: group.indices
Aliases: group.indices
Keywords: misc
Description: Given an expression object get the array indices for a particular set of arrays
URL: ../../../library/exonmap/html/group.indices.html

Entry: mappings
Aliases: mappings probeset.to.probe probeset.to.exon probeset.to.transcript probeset.to.gene exon.to.probeset exon.to.transcript exon.to.gene transcript.to.probeset transcript.to.exon transcript.to.gene gene.to.probeset gene.to.exon gene.to.transcript symbol.to.gene symbol.to.probeset gene.to.exon.probeset gene.to.exon.probeset.expr exon.to.sequence
Keywords: misc
Description: Map between probes, probesets, exons, transcripts and genes
URL: ../../../library/exonmap/html/mappings.html

Entry: pc
Aliases: pc fc tt
Keywords: misc
Description: Simple pariwise comparisons on exon expression data
URL: ../../../library/exonmap/html/pc.html

Entry: plotGene
Aliases: plotGene col.rd.bl
Keywords: misc
Description: Use the X:MAP database to find annotated gene structure and generate a plot
URL: ../../../library/exonmap/html/plotGene.html

Entry: probes.in.range
Aliases: probes.in.range probesets.in.range exons.in.range transcripts.in.range genes.in.range
Keywords: misc
Description: Given a set of chromosome coordinates, return the genomic features within
URL: ../../../library/exonmap/html/probes.in.range.html

Entry: probeset.stats
Aliases: probeset.stats
Keywords: misc
Description: Generates summary statistics showing intron, exon and gene hits for the spefied probeset list
URL: ../../../library/exonmap/html/probeset.stats.html

Entry: read.exon
Aliases: read.exon
Keywords: misc
Description: Read a Set of .CEL Files and Phenotypic Data representing exon arrays
URL: ../../../library/exonmap/html/read.exon.html

Entry: si
Aliases: si splicing.index
Keywords: misc
Description: Calculate the splicing index
URL: ../../../library/exonmap/html/si.html

Entry: x.rma
Aliases: x.rma
Keywords: misc
Description: Sample exonmap dataset
URL: ../../../library/exonmap/html/x.rma.html

Entry: xmapDatabase
Aliases: xmapDatabase xmapConnect xmapDisconnect
Keywords: misc
Description: Connect/disconnect to an xmap database
URL: ../../../library/exonmap/html/xmapConnect.html

Entry: xmapGene
Aliases: xmapGene xmapTranscript xmapExon xmapProbeset
Keywords: misc
Description: Open a browser window at the X:Map database, centered on the specified feature
URL: ../../../library/exonmap/html/xmapGene.html
