borderQC2            package:affyQCReport            R Documentation

_C_e_n_t_e_r _o_f _i_n_t_e_n_s_i_t_y _Q_C _p_l_o_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Creates the fifth page of the  QC report created by 'QCReport' for
     an object of class 'AffyBatch'   The page contains plots showing
     the center of intensity of the border element of arrays in an
     'AffyBatch'  object.

_U_s_a_g_e:

     borderQC2(object)

_A_r_g_u_m_e_n_t_s:

  object: An object of class 'AffyBatch'.

_D_e_t_a_i_l_s:

     This creates the fifth page of a 'QCReport' report.  Plots of the
     center of intensity of the positive and negative border elements
     of arrays in a 'AffyBatch' object are shown.  This plot is useful
     for detecting spatial biases in intensities on an array.

     More details are available in the vignette.

_V_a_l_u_e:

     TRUE

_E_x_a_m_p_l_e_s:

        library(affydata)
         data(Dilution)

        borderQC2(Dilution)

