FastqQA-class           package:ShortRead           R Documentation

_Q_u_a_l_i_t_y _a_s_s_e_s_s_m_e_n_t _s_u_m_m_a_r_i_e_s _f_r_o_m _M_A_Q _m_a_p _f_i_l_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This class contains a list-like structure with summary
     descriptions derived from visiting one or more Solexa export
     files.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects of the class are usually produced by a 'qa' method.

_S_l_o_t_s:


     '._s_r_l_i_s_t': Object of class '"list"', containing data frames or
          lists of data frames summarizing the results of qa.

_E_x_t_e_n_d_s:

     Class '"SRList"', directly. Class '".QA"', directly. Class
     '".SRUtil"', by class "SRList", distance 2. Class
     '".ShortReadBase"', by class ".QA", distance 2.

_M_e_t_h_o_d_s:

     Accessor methods are inheritted from the 'SRList' class.

     Additional methods defined on this class are:

     _r_e_p_o_r_t 'signature(x="FastqQA", ..., dest=tempfile(),
          type="html")': produces HTML files summarizing QA results.
          'dest' should be a directory.

_A_u_t_h_o_r(_s):

     Martin Morgan <mtmorgan@fhcrc.org>

_S_e_e _A_l_s_o:

     'qa'.

_E_x_a_m_p_l_e_s:

     showClass("FastqQA")

