parseComplex             package:RpsiXML             R Documentation

_P_a_r_s_e _c_o_m_p_l_e_x, _i_n_t_e_r_a_c_t_o_r _a_n_d _e_x_p_e_r_i_m_e_n_t _f_r_o_m _P_S_I-_M_I _2._5 _X_M_L _n_o_d_e

_D_e_s_c_r_i_p_t_i_o_n:

     Wrappers of internal functions (".parsePsimi25Complex",
     ".parsePsimi25Interactor", ".parsePsimi25Experiment") to parse
     nodes from PSI-MI 2.5 XML node. By default these parsers is used
     in objects of 'psimi25Source-class' without any modification.
     Though they can be overwritten in these objects in special cases,
     it is not advisory to do so due to the compatibility.

_U_s_a_g_e:

     parseComplex(x, ...)
     parseInteractor(x, ...)
     parseExperiment(x, ...)

_A_r_g_u_m_e_n_t_s:

       x: An object of the 'psimi25Source-class' 

     ...: Parameters passed to internal functions

_V_a_l_u_e:

     Object of 'psimi25Complex-class, \code{psimi25Interactor-class} or
     \code{psimi25Experiment-class} '

_N_o_t_e:

     An newly initialized instance of 'psimi25Source-class' contains
     the default form of these functions. Though they are allowd to be
     overwritten, it is not advisory to do so since this means the file
     to parse is not fully compatible with PSI-MI 2.5 standard. It is
     more sensible to contact the data provider before modifying or
     overwritting these functions.

_A_u_t_h_o_r(_s):

     Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang
     <tchiang@ebi.ac.uk>

