pBase              package:PAnnBuilder              R Documentation

_D_e_f_i_n_e _C_l_a_s_s _a_n_d _O_b_j_e_c_t

_D_e_s_c_r_i_p_t_i_o_n:

     This function define class and create new object.

_U_s_a_g_e:

     pBase(srcUrl, parser, built="", fromWeb=TRUE, organism)

_A_r_g_u_m_e_n_t_s:

  srcUrl: a character string for the url where data file will be 
          retained.

  parser: a character string for the path of the parser file.

   built: a character string for the release/version information of
          source data. 

 fromWeb: a boolean to indicate whether the source data will be
          downloaded from the web or read from a local file

organism: a character string for the name of the organism of concern.
          (eg: "Homo sapiens")

_D_e_t_a_i_l_s:

     Bioconductor "AnnBuilder" package define a class "pubRepo". Here
     we  define a subclass of "pubRepo" called "pBase". "pBase" is used
     to process  data from SwissProt, TREMBL, IPI, NCBI RefSeq
     databases.

_V_a_l_u_e:

     'pBase' return a object of "pBase" class.

_A_u_t_h_o_r(_s):

     Hong Li

