Entry: GOABuilder_DB
Aliases: GOABuilder_DB
Keywords: 
Description: Build Data Packages for Proteomics Gene Ontology
URL: ../../../library/PAnnBuilder/html/GOABuilder_DB.html

Entry: HomoloGeneBuilder_DB
Aliases: HomoloGeneBuilder_DB
Keywords: 
Description: Build Data Packages for Homolog Protein Group
URL: ../../../library/PAnnBuilder/html/HomoloGeneBuilder_DB.html

Entry: InParanoidBuilder_DB
Aliases: InParanoidBuilder_DB
Keywords: 
Description: Build Data Packages for Ortholog Protein Group
URL: ../../../library/PAnnBuilder/html/InParanoidBuilder_DB.html

Entry: PeptideAtlasBuilder_DB
Aliases: PeptideAtlasBuilder_DB
Keywords: 
Description: Build data package for experimentally identified peptides
URL: ../../../library/PAnnBuilder/html/PeptideAtlasBuilder_DB.html

Entry: bfBuilder_DB
Aliases: bfBuilder_DB
Keywords: 
Description: Build Data Packages for Body Fluid Proteomes
URL: ../../../library/PAnnBuilder/html/bfBuilder_DB.html

Entry: createAnnObjs
Aliases: createAnnObjs createSeeds dbschema dbschema,DBIConnection-method dbschema,environment-method dbschema,AnnDbObj-method
Keywords: 
Description: Creates the AnnObj instances
URL: ../../../library/PAnnBuilder/html/createAnnObjs.html

Entry: crossBuilder_DB
Aliases: crossBuilder_DB fasta2list idBlast
Keywords: 
Description: Build Data Packages for Protein ID Mapping
URL: ../../../library/PAnnBuilder/html/crossBuilder_DB.html

Entry: dNameBuilder_DB
Aliases: dNameBuilder_DB
Keywords: 
Description: Build Data Packages for Mapping between ID and Name
URL: ../../../library/PAnnBuilder/html/dNameBuilder_DB.html

Entry: getSrcUrl
Aliases: speciesNorganism organism2species organism2alias getShortSciName organism2taxID taxID2organism .srcUrls getSrcUrl getALLUrl getSrcBuilt getALLBuilt getSPUrl getTREMBLUrl getIPIUrl getREFSEQUrl getGOUrl getGOAUrl getGENEINTUrl getINTACTUrl getMPPIUrl get3DIDUrl getDOMINEUrl getDBSUBLOCUrl getBACELLOUrl getINTERPROUrl getPFAMUrl getSCOPUrl getHOMOLOGENEUrl getINPARANOIDUrl getPEPTIDEATLASUrl getSYSPTMUrl getSYSBODYFLUIDUrl getKEGGUrl getSPBuilt getTREMBLBuilt getIPIBuilt getREFSEQBuilt getGOABuilt getGENEINTBuilt getINTACTBuilt getMPPIBuilt get3DIDBuilt getDOMINEBuilt getDBSUBLOCBuilt getBACELLOBuilt getINTERPROBuilt getPFAMBuilt getSCOPBuilt getHOMOLOGENEBuilt getINPARANOIDBuilt getPEPTIDEATLASBuilt getSYSPTMBuilt getSYSBODYFLUIDBuilt getSrcSQUrl getSrcSQBuilt getIPISQUrl getREFSEQSQUrl
Keywords: 
Description: Get the Url and Release information for Diverse Databases
URL: ../../../library/PAnnBuilder/html/getSrcUrl.html

Entry: pBase
Aliases: pBase
Keywords: 
Description: Define Class and Object
URL: ../../../library/PAnnBuilder/html/initClasses.html

Entry: intBuilder_DB
Aliases: intBuilder_DB
Keywords: 
Description: Build Data Package for Interaction
URL: ../../../library/PAnnBuilder/html/intBuilder_DB.html

Entry: loadFromUrl
Aliases: loadFromUrl validateUrl unzipFile
Keywords: 
Description: Load Files from a Web Site
URL: ../../../library/PAnnBuilder/html/loadFromUrl.html

Entry: makeLLDB
Aliases: makeLLDB
Keywords: 
Description: Create a Lazy Loading Database for Package Data Files
URL: ../../../library/PAnnBuilder/html/makeLLDB.html

Entry: pBaseBuilder_DB
Aliases: pBaseBuilder_DB
Keywords: 
Description: Build Data Packages for Primary Protein Database
URL: ../../../library/PAnnBuilder/html/pBaseBuilder_DB.html

Entry: pSeqBuilder_DB
Aliases: pSeqBuilder_DB
Keywords: 
Description: Build Data Packages for Query Sequences
URL: ../../../library/PAnnBuilder/html/pSeqBuilder_DB.html

Entry: processData
Aliases: processData getBaseParsers fileMuncher fileMuncher_DB writeInput writeInputSP writeInputIPI writeInputREFSEQ writeInputBLAST writeInputPFAM writeInputINTERPRO writeOutput .callPerl getSrcObjs getBaseData splitEntry twoStepSplit mergeRowByKey
Keywords: 
Description: Convert Data Format
URL: ../../../library/PAnnBuilder/html/processData.html

Entry: ptmBuilder_DB
Aliases: ptmBuilder_DB
Keywords: 
Description: Build Data Packages for Protein Post-Translational Modifications
URL: ../../../library/PAnnBuilder/html/ptmBuilder_DB.html

Entry: scopBuilder_DB
Aliases: scopBuilder_DB
Keywords: 
Description: Build Data Package for Structural Classification of Proteins
URL: ../../../library/PAnnBuilder/html/scopBuilder_DB.html

Entry: subcellBuilder_DB
Aliases: subcellBuilder_DB
Keywords: 
Description: Build Data Package for Protein Subcellular Location
URL: ../../../library/PAnnBuilder/html/subcellBuilder_DB.html

Entry: writeData_DB
Aliases: createEmptyDPkg writeMeta_DB writeData_DB writeSPData_DB writeIPIData_DB writeREFSEQData_DB writeSYSBODYFLUIDData_DB writeGOAData_DB writeHomoloGeneData_DB writeInParanoidData_DB writeGENEINTData_DB writeINTACTData_DB writeMPPIData_DB write3DIDData_DB writeDOMINEData_DB writePeptideAtlasData_DB writeSYSPTMData_DB writeSCOPData_DB writeBACELLOData_DB writeDBSUBLOCData_DB writeName_DB writeGOName_DB writeKEGGName_DB writePFAMName_DB writeINTERPROName_DB writeTAXName_DB
Keywords: 
Description: Parse and Write Data into R Data Packages
URL: ../../../library/PAnnBuilder/html/writeData_DB.html

Entry: writeManPage
Aliases: getRepList copyTemplates writeDescription writeDescription_DB writeManAnno writeManAnno_DB copyTemplates_DB writeManSQ writeManMerge
Keywords: 
Description: Write Help Documents
URL: ../../../library/PAnnBuilder/html/writeManPage.html

Entry: .onLoad
Aliases: .onLoad sourceURLs descriptionInfo taxLists
Keywords: 
Description: Load packages and data
URL: ../../../library/PAnnBuilder/html/zzz.html
