Entry: Nondocumented-objects
Aliases: Nondocumented-objects
Keywords: documentation internal
Description: Here goes every undocumented function.
URL: ../../../library/GeneRegionScan/html/Nondocumented-objects.html

Entry: ProbeLevelSet-class
Aliases: ProbeLevelSet ProbeLevelSet-class
Keywords: classes
Description: Class ProbeLevelSet
URL: ../../../library/GeneRegionScan/html/ProbeLevelSet-class.html

Entry: addSnpPdata
Aliases: addSnpPdata addSnpPdata,ExpressionSet-method
Keywords: documentation utilities
Description: Add SNP data from hapmap-style data file to pData of ExpressionSet
URL: ../../../library/GeneRegionScan/html/addSnpPdata.html

Entry: checkForFileInPath
Aliases: checkForFileInPath
Keywords: documentation utilities
Description: Check For File In Path
URL: ../../../library/GeneRegionScan/html/checkForFileInPath.html

Entry: doProbeLinear
Aliases: doProbeLinear
Keywords: documentation utilities
Description: Do Probe Linear
URL: ../../../library/GeneRegionScan/html/doProbeLinear.html

Entry: doProbeTTest
Aliases: doProbeTTest
Keywords: documentation utilities
Description: Do Probe T-Test
URL: ../../../library/GeneRegionScan/html/doProbeTTest.html

Entry: exampleProbeLevelSet
Aliases: exampleProbeLevelSet
Keywords: datasets
Description: Example Dataset of class 'ProbeLevelSet'
URL: ../../../library/GeneRegionScan/html/exampleProbeLevelSet.html

Entry: excludeDoubleMatchingProbes
Aliases: excludeDoubleMatchingProbes excludeDoubleMatchingProbes,ProbeLevelSet-method
Keywords: documentation utilities
Description: Exclude ProbeLevelSet probes that match more than once in genome
URL: ../../../library/GeneRegionScan/html/excludeDoubleMatchingProbes.html

Entry: exonStructure
Aliases: exonStructure
Keywords: documentation utilities
Description: Add exon-structure to plots
URL: ../../../library/GeneRegionScan/html/exonStructure.html

Entry: findSequenceInGenome
Aliases: findSequenceInGenome
Keywords: documentation utilities
Description: Find a sequence in genome
URL: ../../../library/GeneRegionScan/html/findSequenceInGenome.html

Entry: geneRegionScan
Aliases: geneRegionScan GeneRegionScan geneRegionScan,ExpressionSet-method
Keywords: documentation utilities
Description: Gene Region Scan
URL: ../../../library/GeneRegionScan/html/geneRegionScan.html

Entry: genomic
Aliases: genomic
Keywords: datasets
Description: genomic sequence of gene in ProbeLevelSet
URL: ../../../library/GeneRegionScan/html/genomic.html

Entry: getLocalMetaprobeIntensities
Aliases: getLocalMetaprobeIntensities
Keywords: documentation utilities
Description: Get Metaprobe Intensities locally
URL: ../../../library/GeneRegionScan/html/getLocalMetaprobeIntensities.html

Entry: getLocalProbeIntensities
Aliases: getLocalProbeIntensities
Keywords: documentation utilities
Description: Get Probe Intensities locally
URL: ../../../library/GeneRegionScan/html/getLocalProbeIntensities.html

Entry: getMetaprobesetsFromRegionOfInterest
Aliases: getMetaprobesetsFromRegionOfInterest
Keywords: documentation utilities
Description: Get Meta Probe Set IDs From Region Of Interest
URL: ../../../library/GeneRegionScan/html/getMetaprobesetsFromRegionOfInterest.html

Entry: getProbeLevelAnnotationForExonArrays
Aliases: getProbeLevelAnnotationForExonArrays
Keywords: documentation utilities
Description: Get ProbeLevel Annotation for Exon Arrays
URL: ../../../library/GeneRegionScan/html/getProbeLevelAnnotationForExonArrays.html

Entry: getProbesetsFromRegionOfInterest
Aliases: getProbesetsFromRegionOfInterest
Keywords: documentation utilities
Description: Get Probeset IDs From Region Of Interest
URL: ../../../library/GeneRegionScan/html/getProbesetsFromRegionOfInterest.html

Entry: getSequence
Aliases: getSequence getSequence,ProbeLevelSet-method
Keywords: documentation utilities
Description: Get Sequence from a ProbeLevelSet
URL: ../../../library/GeneRegionScan/html/getSequence.html

Entry: getServerProbeIntensities
Aliases: getServerProbeIntensities
Keywords: documentation utilities
Description: Get Probe Intensities from a server
URL: ../../../library/GeneRegionScan/html/getServerProbeIntensities.html

Entry: mrna
Aliases: mrna
Keywords: datasets
Description: mRNA sequence of gene in ProbeLevelSet
URL: ../../../library/GeneRegionScan/html/mrna.html

Entry: plotCoexpression
Aliases: plotCoexpression plotCoexpression,ExpressionSet-method
Keywords: documentation utilities
Description: Plot Coexpression of probes in a ProbeLevelSet
URL: ../../../library/GeneRegionScan/html/plotCoexpression.html

Entry: plotOnGene
Aliases: plotOnGene plotOnGene,ExpressionSet-method
Keywords: documentation utilities
Description: Plot probe level data on a gene
URL: ../../../library/GeneRegionScan/html/plotOnGene.html

Entry: plotStatistics
Aliases: plotStatistics
Keywords: documentation utilities
Description: Plot Statistics
URL: ../../../library/GeneRegionScan/html/plotStatistics.html

Entry: readGeneInput
Aliases: readGeneInput
Keywords: documentation utilities
Description: Standardize reading of gene inputs
URL: ../../../library/GeneRegionScan/html/readGeneInput.html

Entry: translateSampleNames
Aliases: translateSampleNames translateSampleNames,ExpressionSet-method
Keywords: documentation utilities
Description: Translate sample names using translation file
URL: ../../../library/GeneRegionScan/html/translateSampleNames.html
