Entry: BSParams-class
Aliases: class:BSParams BSParams-class BSParams
Keywords: classes
Description: Class "BSParams"
URL: ../../../library/BSgenome/html/BSParams-class.html

Entry: BSgenome-class
Aliases: class:BSgenome BSgenome-class BSgenome sourceUrl sourceUrl,BSgenome-method seqnames seqnames,BSgenome-method seqlengths seqlengths,BSgenome-method mseqnames mseqnames,BSgenome-method names,BSgenome-method masknames masknames,BSgenome-method BSgenome show,BSgenome-method length,BSgenome-method [[,BSgenome-method [[<-,BSgenome-method $,BSgenome-method
Keywords: methods classes
Description: BSgenome objects
URL: ../../../library/BSgenome/html/BSgenome-class.html

Entry: BSgenomeForge
Aliases: BSgenomeForge BSgenomeDataPkgSeed class:BSgenomeDataPkgSeed BSgenomeDataPkgSeed-class forgeBSgenomeDataPkg forgeBSgenomeDataPkg,BSgenomeDataPkgSeed-method forgeBSgenomeDataPkg,list-method forgeBSgenomeDataPkg,character-method forgeSeqlengthsFile forgeSeqFiles forgeMasksFiles
Keywords: manip
Description: The BSgenomeForge functions
URL: ../../../library/BSgenome/html/BSgenomeForge.html

Entry: GenomeData-class
Aliases: GenomeData-class provider,GenomeData-method organism,GenomeData-method providerVersion,GenomeData-method GenomeData show,GenomeData-method coerce,GenomeData,data.frame-method
Keywords: methods classes
Description: Data on the genome
URL: ../../../library/BSgenome/html/GenomeData-class.html

Entry: GenomeDataList-class
Aliases: GenomeDataList-class GenomeDataList coerce,GenomeDataList,data.frame-method
Keywords: methods classes
Description: List of GenomeData objects
URL: ../../../library/BSgenome/html/GenomeDataList-class.html

Entry: GenomeDescription-class
Aliases: class:GenomeDescription GenomeDescription-class GenomeDescription organism organism,GenomeDescription-method species species,GenomeDescription-method provider provider,GenomeDescription-method providerVersion providerVersion,GenomeDescription-method releaseDate releaseDate,GenomeDescription-method releaseName releaseName,GenomeDescription-method show,GenomeDescription-method
Keywords: methods classes
Description: GenomeDescription objects
URL: ../../../library/BSgenome/html/GenomeDescription-class.html

Entry: available.genomes
Aliases: available.genomes installed.genomes
Keywords: manip
Description: Find available/installed genomes
URL: ../../../library/BSgenome/html/available.genomes.html

Entry: bsapply
Aliases: bsapply
Keywords: manip
Description: bsapply
URL: ../../../library/BSgenome/html/bsapply.html

Entry: gdapply
Aliases: gdapply gdapply,GenomeData,function-method gdapply,GenomeDataList,function-method gdApply gdApply,GenomeData,function-method gdApply,GenomeDataList,function-method
Keywords: manip
Description: Applies a function to elements of a GenomeData
URL: ../../../library/BSgenome/html/gdapply.html

Entry: getSeq
Aliases: getSeq getSeq,BSgenome-method
Keywords: manip
Description: getSeq
URL: ../../../library/BSgenome/html/getSeq.html

Entry: injectSNPs
Aliases: injectSNPs injectSNPs,BSgenome-method SNPlocs_pkgname SNPlocs_pkgname,BSgenome-method SNPcount SNPcount,BSgenome-method SNPlocs SNPlocs,BSgenome-method available.SNPs
Keywords: manip
Description: SNP injection
URL: ../../../library/BSgenome/html/injectSNPs.html

Entry: strand
Aliases: strand-methods strand strand,missing-method strand,character-method
Keywords: methods
Description: Accessing strand information
URL: ../../../library/BSgenome/html/strand.html
