Entry: Probes-class
Aliases: Probes-class initialize,Probes-method show,Probes-method plot,Probes-method plot,Probes-method grid.plot,Probes,missing-method grid.plot,Probes,SpliceSites-method plot,Probes,missing-method plot,Probes,SpliceSites-method
Keywords: classes
Description: Class "Probes"
URL: ../../../library/splicegear/html/Probes-class.html

Entry: SpliceExprSet-class
Aliases: SpliceExprSet-class grid.plot spliceSites grid.plot,SpliceExprSet,missing-method plot,SpliceExprSet,missing-method show,SpliceExprSet-method spliceSites,SpliceExprSet-method exprs,SpliceExprSet-method exprs<-,SpliceExprSet,ANY-method grid.plot,SpliceSites,missing-method
Keywords: classes
Description: Class "SpliceExprSet"
URL: ../../../library/splicegear/html/SpliceExprSet-class.html

Entry: SpliceSites-class
Aliases: SpliceSites-class show,SpliceSites-method plot,SpliceSites-method initialize,SpliceSites-method plot,SpliceSites,missing-method
Keywords: classes
Description: Class "SpliceSites"
URL: ../../../library/splicegear/html/SpliceSites-class.html

Entry: SpliceSitesGenomic-class
Aliases: SpliceSitesGenomic-class plot,SpliceSitesGenomic-method plot,SpliceSitesGenomic,missing-method
Keywords: classes
Description: Class "SpliceSitesGenomic"
URL: ../../../library/splicegear/html/SpliceSitesGenomic-class.html

Entry: as.data.frame.SpliceExprSet
Aliases: as.data.frame.SpliceExprSet as.data.frame.SpliceSites
Keywords: manip
Description: SpliceExprSet object to data.frame converter
URL: ../../../library/splicegear/html/as.data.frame.SpliceExprSet.html

Entry: barplot.SpliceSites
Aliases: barplot.SpliceSites
Keywords: hplot
Description: barplot for SpliceSites
URL: ../../../library/splicegear/html/barplot.SpliceSites.html

Entry: buildSpliceSites
Aliases: buildSpliceSites queryPALSdb getPALSdbURL
Keywords: manip
Description: Functions to query PALSdb
URL: ../../../library/splicegear/html/buildSpliceSites.html

Entry: getRelSignStrength
Aliases: getRelSignStrength getFinalRatio
Keywords: manip
Description: functions to perform SPLICE
URL: ../../../library/splicegear/html/getRelSignStrength.html

Entry: grid.expand.gp
Aliases: grid.expand.gp grid.make.numeric2npc
Keywords: hplot
Description: convenience functions for grid
URL: ../../../library/splicegear/html/grid.helpers.html

Entry: grid.plot.Probes
Aliases: grid.plot.Probes grid.plot.SpliceSites grid.plot.SpliceExprSet
Keywords: hplot
Description: Plot splicegear objects
URL: ../../../library/splicegear/html/grid.plot.SpliceSites.html

Entry: isProbeOnSpliceSite
Aliases: isProbeOnSpliceSite isSpliceSiteOnProbe
Keywords: manip
Description: Check the presence of probes on certain exons
URL: ../../../library/splicegear/html/isProbeOnSpliceSite.html

Entry: matchprobes2Probes
Aliases: matchprobes2Probes
Keywords: hplot
Description: create Probes object from matchprobes results
URL: ../../../library/splicegear/html/matchprobes2Probes.html

Entry: plot.SpliceExprSet
Aliases: plot.SpliceExprSet
Keywords: hplot
Description: plot a SpliceExprSet
URL: ../../../library/splicegear/html/plot.SpliceExprSet.html

Entry: plot.SpliceSites
Aliases: plot.SpliceSites plot.Probes
Keywords: hplot
Description: plot a SpliceSites object
URL: ../../../library/splicegear/html/plot.SpliceSites.html

Entry: plot.SpliceSitesGenomic
Aliases: plot.SpliceSitesGenomic
Keywords: hplot
Description: Function to plot SpliceSitesGenomic objects
URL: ../../../library/splicegear/html/plot.SpliceSitesGenomic.html

Entry: sort.SpliceExprSet
Aliases: sort.SpliceExprSet
Keywords: manip
Description: A function to sort a SpliceExprSet
URL: ../../../library/splicegear/html/sort.SpliceExprSet.html

Entry: spliceset
Aliases: spliceset probes spsites eset
Keywords: datasets
Description: Example data for splicegear
URL: ../../../library/splicegear/html/spliceset.html

Entry: split.SpliceSites
Aliases: split.SpliceSites
Keywords: manip
Description: split an instance of SpliceSites
URL: ../../../library/splicegear/html/split.SpliceSites.html
