antisenseThetaA            package:oligo            R Documentation

_S_u_m_m_a_r_i_z_e_d _M_e_a_s_u_r_e_s _f_o_r _S_N_P

_D_e_s_c_r_i_p_t_i_o_n:

     SNPRMA summarizes the intensities for each SNP into 4 quantities.
     These measures are at the log2 scale and are used to create
     log-ratios and log-averages, which are used by the genotype
     algorithm and copy number tool.

_U_s_a_g_e:

     antisenseThetaA(obj)
     antisenseThetaA(obj)
     senseThetaA(obj)
     senseThetaA(obj)

_A_r_g_u_m_e_n_t_s:

     obj: 'SnpQSet' object

_D_e_t_a_i_l_s:

     For a given SNP, an Affymetrix SNP array usually contains multiple
     features for each combination allele x strand, on which the
     summaries are computed.

_V_a_l_u_e:

     A matrix with R rows (SNP's) x C columns (Samples).

_S_e_e _A_l_s_o:

     'snprma', 'crlmm'

