justSNPRMA               package:oligo               R Documentation

_S_u_m_m_a_r_i_z_a_t_i_o_n _o_f _S_N_P _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     This function implements the SNPRMA method for summarization of
     SNP data. It works directly with the CEL files, saving memory.

_U_s_a_g_e:

     justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

_A_r_g_u_m_e_n_t_s:

filenames: character vector with the filenames.

 verbose: logical flag for verbosity.

phenoData: a 'phenoData' object or 'NULL'

normalizeToHapmap: Normalize to Hapmap? Should always be TRUE, but it's
          kept here for future use.

_V_a_l_u_e:

     'SnpQSet' or a 'SnpCnvQSet', depending on the array type.

_S_e_e _A_l_s_o:

     ~~objects to See Also as 'help', ~~~

_E_x_a_m_p_l_e_s:

     ## snprmaResults <- justSNPRMA(list.celfiles())

