Entry: GBM
Aliases: GBM
Keywords: datasets
Description: Glioblastoma multiforme array CGH data
URL: ../../../library/SMAP/html/GBM.html

Entry: SMAP-internal
Aliases: A,grad-method A,eta-method Phi,grad-method Phi,eta-method Pi,grad-method Pi,eta-method initialize,grad-method initialize,eta-method initialize,gaussparam-method value,eta-method P,SMAPProfile-method Q,SMAPProfile-method Q,SMAPProfiles-method HMM,SMAPProfile-method initialize,SMAPProfile-method observations,SMAPProfile-method observations,SMAPProfiles-method show,SMAPProfile-method show,SMAPProfiles-method name,SMAPProfile-method name,SMAPProfiles-method [,SMAPProfile-method [,SMAPObservations-method [[<-,SMAPProfiles-method chromosome,SMAPObservations-method endPosition,SMAPObservations-method initialize,SMAPObservations-method name,SMAPObservations-method noObservations,SMAPObservations-method reporterId,SMAPObservations-method show,SMAPObservations-method startPosition,SMAPObservations-method value,SMAPObservations-method A,SMAPHMM-method Phi,SMAPHMM-method Pi,SMAPHMM-method initialize,SMAPHMM-method noStates,SMAPHMM-method show,SMAPHMM-method smap,SMAPHMM,SMAPObservations-method plot,SMAPProfile,missing-method plot,SMAPProfiles,missing-method
Keywords: methods internal
Description: SMAP-internal
URL: ../../../library/SMAP/html/SMAP-internal.html

Entry: SMAPHMM-class
Aliases: SMAPHMM-class A Phi Pi noStates
Keywords: classes
Description: Class "SMAPHMM": A class to manage HMMs for the SMAP package
URL: ../../../library/SMAP/html/SMAPHMM-class.html

Entry: SMAPHMM
Aliases: SMAPHMM
Keywords: classes
Description: Constructor for "SMAPHMM" objects
URL: ../../../library/SMAP/html/SMAPHMM.html

Entry: SMAPObservations-class
Aliases: SMAPObservations-class chromosome endPosition name noObservations reporterId startPosition value plot,SMAPObservations,missing-method
Keywords: classes
Description: Class "SMAPObservations": A class to manage microarray observations for the SMAP package
URL: ../../../library/SMAP/html/SMAPObservations-class.html

Entry: SMAPObservations
Aliases: SMAPObservations
Keywords: classes
Description: Constructor for "SMAPObservations" objects
URL: ../../../library/SMAP/html/SMAPObservations.html

Entry: SMAPProfile-class
Aliases: SMAPProfile-class HMM observations P Q
Keywords: classes
Description: Class "SMAPProfile"
URL: ../../../library/SMAP/html/SMAPProfile-class.html

Entry: SMAPProfiles-class
Aliases: SMAPProfiles-class
Keywords: classes
Description: Class "SMAPProfiles"
URL: ../../../library/SMAP/html/SMAPProfiles-class.html

Entry: smap
Aliases: smap
Keywords: methods
Description: smap: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
URL: ../../../library/SMAP/html/smap.html
