79140cabc37e12b63ba353fc4708a864 *CITATION
32dda94cd3b0adea66bdb3c3f2b8acf1 *CONTENTS
9272fd2538c7d47921429e5926aa9c57 *DESCRIPTION
d7dd2df9d42b51aff9e85c8ddfe2b679 *INDEX
c66c8663088a63c2e97dd6de797f32b2 *Meta/Rd.rds
e670688581bc4f2560b37e0861d3f26f *Meta/hsearch.rds
07f9028fc6b9bab600919705b5641019 *Meta/nsInfo.rds
a6320b5e3e3bed6b054c6e3ebc4d590e *Meta/package.rds
32feb9fc394ef2532078722bf1b18fc9 *Meta/vignette.rds
4c352e2ecc8f8c5d055bbd6ebc7dea3b *NAMESPACE
373bcac83a3b315fe941efe0374e3304 *R-ex/arrayImage.R
d372f86b18dd83deb9ac15ad10448d66 *R-ex/asExprSet.R
31f51aecb456677bb7affb0159503d36 *R-ex/autocorr.R
5db5242c661bf1c72b759efa2984736b *R-ex/chipAlongChrom.R
12b8ceb3d38a7a1a59d051d536f7e2fe *R-ex/computeRunningMedians.R
6c39d08af17683986e0fd3ce3191e39f *R-ex/compute_gc.R
748b15038e08c1df04c4cbf8053d5002 *R-ex/corrPlot.R
cd4fd790d53ca08058d87690080a64ac *R-ex/findPeaksOnSmoothed.R
20e00cb3656e1ca78e129d14d12ebc99 *R-ex/ftr2xys.R
573e6585224b449c94591378531f90a5 *R-ex/newPeak.R
47ea405170ba8e4f04f9956fa9430e3b *R-ex/peakByThreshold.R
55d533be383a01936aba0e1cf69f471a *R-ex/peakClass.R
0d8d93c04b987fd231d1dd6fe08b19be *R-ex/plotAutocorr.R
474fbf412c55f810b7c0d6b1dddf3c6f *R-ex/plot_peak.R
d977596d693672163304c953a302be45 *R-ex/preprocess.R
9310495e93408b27f3579a950c794207 *R-ex/readNimblegen.R
85a1ba73f520a24701de6aaa02135c5c *R-ex/relatePeaks.R
bc48cb7570877ff0aba815cf922d3cd0 *R-ex/sliding_quantile.R
f07d3015c4220dea7a7be8c741d2985b *R/Ringo
945b5ada37f107721a14453ded68ea4a *R/Ringo.rdb
abe6c82f99d2d7c9ff05222767e2d01d *R/Ringo.rdx
880e359be2cce1cc12729a70611d78c0 *chtml/Ringo.chm
838906b8b452991e92efbb194899f365 *doc/Makefile
d96f41fac64189e7c51d3cacbe083844 *doc/Ringo-Bibliography.bib
81cce4ee61ca7704acb7e88be7a6a6c4 *doc/Ringo.Rnw
767e27aa4a78c6c0f4a5f63592eadb8c *doc/Ringo.pdf
263175cadd82bb9bbcf3ade5c13f2f10 *doc/Ringo.tex
c764a26ecf0d6023b5c753cbc8333cac *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
4e90c7855d3102c3f869cfebcf8272fb *exData/README.txt
c78e056c5e6bcd0215b0bc92ecf804df *exData/exampleProbeAnno.rda
643ecee7477324452cbf1040dc5489a6 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
ce577d7eb54eb43c94e40a91fa955465 *exData/spottypes.txt
c524de44cdfda14ba768007796dab974 *help/AnIndex
3e2d2afcb69f8f8ce2fc0649516ec59c *help/Ringo-internal
ef304af771084e451f2e78845e85c0f0 *help/arrayImage
6a748decfee89b128ef546024470f390 *help/asExprSet
979b32320e70cad287fa6179ff22230e *help/autocorr
662c5fcad5204841eebc1ea4e587c923 *help/chipAlongChrom
b19351a7be1c79460ebcc2261d4beced *help/computeRunningMedians
323ee4c97f040c3382550d956e2772e4 *help/compute_gc
58c39e526b881e8b9b6028cccedd05f5 *help/corrPlot
5c53c914515e547a49ad63df28e413f4 *help/findPeaksOnSmoothed
1b6a732d4080fa6d9b36057e380cf86b *help/ftr2xys
690282418f343ab19af08a3fda2cce5c *help/newPeak
f60759ffc6ebe660aa2ed47e21feda2a *help/nimblegenNorm
93a43bdb3b79cb8e78476b350c6a87a5 *help/peakByThreshold
11419de2fdf1c8b10c3050a1c47a27dc *help/peakClass
223f6c8228c1177ff0d4c38da5a72d47 *help/plotAutocorr
a27fb611dac4c0968acd5bbcab83426d *help/plot_peak
6abe783c58899dc206fa80d845fee0e1 *help/preprocess
c84da8e2cdad2b9b6456fce3cc8dc6cc *help/readNimblegen
3e3d85a066ee6951047f34342daeabf7 *help/relatePeaks
eca0acde91cc752080f2c195a7db4bfb *help/sliding_quantile
8d08c33d818cd30613a392737c449c7a *html/00Index.html
76d50676bee3193b31824504426ab709 *html/Ringo-internal.html
8734a77984bc999e07cbf5d32be6b279 *html/arrayImage.html
7c74cb13b2698f4523e4b46d1d590cbc *html/asExprSet.html
bf75c867b21a54b5c8c1292ec5ab7ac2 *html/autocorr.html
2454f102481d4c07e4307bfc7afa9800 *html/chipAlongChrom.html
e16672b61d130764af96b799fc19931b *html/computeRunningMedians.html
5a1f30e930a95c2a053964ebc86b0a1c *html/compute_gc.html
45137292b5a04acba2c782e0eb9be105 *html/corrPlot.html
ef6f11a2aeb6670105ba522f4f4516ca *html/findPeaksOnSmoothed.html
75279f2f53977892d456d328a42f5ad2 *html/ftr2xys.html
882092c17bd9fe9d974f5a0cbfede436 *html/newPeak.html
fe98bfc916349338a22f93a0a9d59490 *html/nimblegenNorm.html
a6e12734e13b8d9e5c50db7120cea21e *html/peakByThreshold.html
1e1f464d1edfd4cbf1739f637c35fd1f *html/peakClass.html
b5f7087826f3c166d80c875ff7c92791 *html/plotAutocorr.html
ab6bf103c8471d364b25930525bf2b4d *html/plot_peak.html
7474495ee29f7fdf501189f5ff14e6cb *html/preprocess.html
fea86e7f597f2944091db198ccfc3dd2 *html/readNimblegen.html
3b79efdc267f6c488163c5bb74e35f44 *html/relatePeaks.html
01deab42945a5edb3779b9a660c48a62 *html/sliding_quantile.html
89c9d709a924400b4e53098975be5140 *latex/Ringo-internal.tex
f87e7233c26fe8a9d95f16c0324d4d09 *latex/arrayImage.tex
3134cbafdcdfb38489ca5c5df83d16ae *latex/asExprSet.tex
15722486829b8c7f28081c8688351549 *latex/autocorr.tex
df851540cba8958a3ebe3d2f44284d67 *latex/chipAlongChrom.tex
de156a5f608d500b4a4bf1c6f72a65d7 *latex/computeRunningMedians.tex
43adb35cfe777f8fc7253d00feffbbce *latex/compute_gc.tex
38c990a737e65f9d39ee942253f834d1 *latex/corrPlot.tex
274635fe662d1a503b345ec1c39ce012 *latex/findPeaksOnSmoothed.tex
19b0489375e5b116c7c6477bc3cc74bf *latex/ftr2xys.tex
be167f743b6afa3130e9e0b15a08ddc8 *latex/newPeak.tex
e33faa48020e83c160c21be7fc8a50b1 *latex/nimblegenNorm.tex
b02a9b0ce378913d3b1767e4681a927c *latex/peakByThreshold.tex
5054d05de6d05386a199b8f101950760 *latex/peakClass.tex
a4593316f400dba80e22f254ef78a456 *latex/plotAutocorr.tex
46785cf23743b7b45822bbcfe2403151 *latex/plot_peak.tex
0a25227d747e283f0a3e945355ed2a99 *latex/preprocess.tex
0e6877764fe3980eb95c14644b98509d *latex/readNimblegen.tex
cb007657fb4f178d73665015a58c12d2 *latex/relatePeaks.tex
dac68f9837671209a7fe3b4802f5fa1a *latex/sliding_quantile.tex
8fdd2d493b75ff6dbccddb99126637d0 *libs/Ringo.dll
78ce6b4698f23e0d487996f92642f96e *man/Ringo.Rd.gz
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
03e2250c84800725faddf439f287b14b *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
c6efbe6d005050be37c224325d858658 *scripts/graphPeaks2Transcripts.R
290da4426addf06bf1fc83a0c1f4a3e9 *scripts/makeProbeAnno.R
