AffyQA              package:AffyExpress              R Documentation

_M_i_c_r_o_a_r_r_a_y _q_u_a_l_i_t_y _c_o_n_t_r_o_l _a_n_d _a_s_s_e_s_s_m_e_n_t

_D_e_s_c_r_i_p_t_i_o_n:

     Create quality control report in an HTML file that contains a set
     of assessment plots, including Affymetrix recommended quality
     assessment, RNA quality assessment, sample quality assessment,
     quality diagnostic using PLM (pseudo-chip images  and NUSE and RLE
     plots) in your current working directory.

_U_s_a_g_e:

     AffyQA(parameters, raw, Output="AffyQA.html") 

_A_r_g_u_m_e_n_t_s:

parameters: a list of variables

     raw: an 'AffyBatch'

  Output: name of the output file

_V_a_l_u_e:

     This function only create an html file

_A_u_t_h_o_r(_s):

     Xiwei Wu xwu@coh.org, Xuejun Arthur Li xueli@coh.org

_E_x_a_m_p_l_e_s:

     ## Not run: 
     data(testData)
     AffyQA(parameters=c("group", "gender"), testData)
     ## End(Not run)

