AffyInteraction         Analyze interaction effect and produce output
AffyQA                  Microarray quality control and assessment
AffyRegress             Select differentially expressed genes, and
                        output the result to a html file
Filter                  filter an 'ExpressionSet' using different
                        methods
interaction.result2html
                        output differentially expressed genes for the
                        interaction model to a HTML file
make.contrast           Create a contrast matrix
make.design             Create a Design Matrix
post.interaction        Create a list of tables for the result based on
                        the main effect variable
pre.process             Converting
regress                 Run regression to fit genewise linear model
result2html             output differentially expressed genes to a HTML
                        file
select.sig.gene         select differentially expressed genes based on
                        p value and/or fold change
testData                AffyBatch instance testData
