SpliceExprSet-class        package:splicegear        R Documentation

_C_l_a_s_s "_S_p_l_i_c_e_E_x_p_r_S_e_t"

_D_e_s_c_r_i_p_t_i_o_n:

     A class to store probe expression values with alternative splicing
     information

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("SpliceExprSet",
     ...)'.

_S_l_o_t_s:

     '_s_p_l_i_c_e_S_i_t_e_s': Object of class '"SpliceSites"'. The probes and
          splice site information.

     '_p_r_o_b_e_s': Object of class '"Probes"'. The matching expression
          values.

     '_e_s_e_t': Object of class '"exprSet"'. The matching expression
          values.

_M_e_t_h_o_d_s:

     _g_r_i_d._p_l_o_t 'signature(x = "SpliceExprSet", y = "missing")': ... 

     _p_l_o_t 'signature(x = "SpliceExprSet", y = "missing")': a ploting
          method.

     _s_h_o_w 'signature(object = "SpliceExprSet")': a printing method. 

     _s_p_l_i_c_e_S_i_t_e_s 'signature(object = "SpliceExprSet")': accessor. 

_A_u_t_h_o_r(_s):

     laurent@cbs.dtu.dk

_R_e_f_e_r_e_n_c_e_s:

     a manuscript in preparation

_S_e_e _A_l_s_o:

     'as.data.frame.SpliceExprSet', 'sort.SpliceExprSet' and
     'SpliceSites-class'

_E_x_a_m_p_l_e_s:

     data(eset, package="splicegear")
     data(probes, package="splicegear")
     data(spsites, package="splicegear")

     spliceset <- new("SpliceExprSet", eset=eset,
                            probes=probes, spliceSites=spsites)

     plot(spliceset)

