Probes-class           package:splicegear           R Documentation

_C_l_a_s_s "_P_r_o_b_e_s"

_D_e_s_c_r_i_p_t_i_o_n:

     Information about a set of probes

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("Probes", pos)'
     or 'new("Probes", pos, info)'. The object are primarily storing
     the location of the probe on a matching sequence sequence.
     Optional information can be stored in the slot 'info' (a
     'data.frame').

_S_l_o_t_s:

     '_p_o_s': Object of class '"matrix"'. It expects one row per probe.
          The first column should give the start position while the
          second column should give the end position

     '_i_n_f_o': Object of class '"data.frame"'. Optional information one
          wishes to carry around can be stored here.

_M_e_t_h_o_d_s:

     _i_n_i_t_i_a_l_i_z_e 'signature(.Object = "Probes")': ... 

     _s_h_o_w 'signature(object)': show minimal information

     _p_l_o_t 'signature(x = "Probes", y = "missing")': plot the position
          of the probes. (see 'plot.Probes') 

     _p_l_o_t 'signature(x = "Probes", y = "SpliceSites")': plot the
          positions of the probes and the positions of the splice sites

_S_e_e _A_l_s_o:

     'SpliceSites-class', 'SpliceExprSet-class',

_E_x_a_m_p_l_e_s:

     data(probes)

     plot(probes)

