EBAM-class              Class EBAM
FindA0-class            Class FindA0
SAM-class               Class SAM
cat.ebam                EBAM Analysis for Categorical Data
cat.stat                SAM Analysis for Categorical Data
d.stat                  SAM Analysis Using a Modified t-statistic
delta.plot              Delta Plots
denspr                  Density Estimation
ebam                    Empirical Bayes Analysis of Microarrays
find.a0                 Computation of the Fudge Factor
fudge2                  Fudge Factor
help.ebam               Help files or argument list for EBAM-specific
                        methods
help.finda0             Help files or argument list for FindA0-specific
                        methods
help.sam                Help files or argument list for SAM-specific
                        methods
link.genes              Links for a list of genes
link.siggenes           Links for a SAM or an EBAM object
list.siggenes           List of the significant genes
pi0.est                 Estimation of the prior probability
plotArguments           Plot Arguments
plotFindArguments       Plot Arguments
qvalue.cal              Computation of the q-value
sam                     Significance Analysis of Microarray
sam.plot2               SAM Plot
siggenes2excel          CSV file of a SAM or an EBAM object
siggenes2html           HTML page for a SAM or an EBAM object
sumSAM-class            Classes sumSAM and sumEBAM
wilc.ebam               EBAM Analysis Using Wilcoxon Rank Statistics
wilc.stat               SAM Analysis Using Wilcoxon Rank Statistics
z.ebam                  EBAM analysis Using t- or F-test
