Chromosome14           package:quantsmooth           R Documentation

_E_x_a_m_p_l_e _d_a_t_a _f_r_o_m _s_e_v_e_r_a_l _q_u_a_n_t_i_t_a_t_i_v_e _g_e_n_o_m_i_c _m_e_t_h_o_d_s

_D_e_s_c_r_i_p_t_i_o_n:

     A collection of arrays that contains data of chromosome 14 of 3
     colorectal tumors. The first tumor shows 1 region of loss, the
     second tumor shows no abberation, while the third  tumor shows
     loss of 1 copy of the chromosome.

     _a_f_f_y._c_n Copy number values of 358 probes from Affymetrix 10K
          genechip. Data was obtained from DChip

     _a_f_f_y._p_o_s corresponding probe positions

     _b_a_c._c_n Copy number values of 112 probes from a 1 mb spaced BAC
          array-CGH 

     _b_a_c._p_o_s corresponding probe positions

     _i_l_l._c_n Copy number values of 207 probes from Illumina GoldenGate
          Linkage IV data

     _i_l_l._p_o_s corresponding probe positions

_U_s_a_g_e:

        data(chr14)

_F_o_r_m_a_t:

     Matrices of copy number values and vectors of chromosomal probe
     positions

_A_u_t_h_o_r(_s):

     Jan Oosting

