arrowProgress	arrowProgress
average	average
average,EexprSet-method	average
calculateSimilarity	calculateSimilarity
checkForDifferentAnnotation	checkForAnnotation
createDirs	createDirs
createEexprSetFromLimma	createEexprSetFromLimma
createFile	createFile
createJOINQuery	createJOINQuery
createNewDBTable	Sample-class
createNewDBTable,Sample-method	Sample-class
createNewDBTable,SignalChannel-method	SignalChannel-class
createSampleFromTable	createSampleFromTable
dbCalculateRegulations	dbCalculateRegulations
dbGetAnnotation	getDBAnnotation
dbGetComparisons	dbGetComparisons
dbGetExperimentInfo	getExperimentDBInfo
dbGetGeneRegulationRanking	dbGetGeneRegulationRanking
dbSearchSimilarPattern	dbSearchSimilarPattern
dbUpdateAnnotation	updateDBAnnotation
deleteExperimentFromDB	deleteExperimentFromDB
distance.euclidian	distance.euclidian
distance.pearson	distance.pearson
distance.pearson.uncentered	distance.pearson.uncentered
distance.spearman	distance.spearman
drawBioControls	EexprSet-class
drawBioControls,EexprSet-method	EexprSet-class
drawHistogram	EexprSet-class
drawHistogram,EexprSet-method	EexprSet-class
drawMA	EexprSet-class
drawMA,EexprSet-method	EexprSet-class
drawMA,exprSet-method	EexprSet-class
drawMAPlot	drawMAPlot
drawPolyAControls	EexprSet-class
drawPolyAControls,EexprSet-method	EexprSet-class
drawVolcanoPlot	drawVolcanoPlot
EexprSet	EexprSet-class
EexprSet-class	EexprSet-class
format.latex	format.latex
getA	EexprSet-class
getA,EexprSet-method	EexprSet-class
getAnnotation	getAnnotation
getArrays	EexprSet-class
getArrays,EexprSet-method	EexprSet-class
getContentMatrix	Sample-class
getContentMatrix,Sample-method	Sample-class
getContentMatrix,SignalChannel-method	SignalChannel-class
getData	Similarity-class
getData,Similarity-method	Similarity-class
getDistances	Similarity-class
getDistances,Similarity-method	Similarity-class
getEDB	getExpValue
getM	EexprSet-class
getM,EexprSet-method	EexprSet-class
getMDB	getMDB
getPathFromFile	getPathFromFile
getPK	getPK
getPK,Sample-method	Sample-class
getSamplesFromDB	getSamplesFromDB
getSignalChannels	EexprSet-class
getSignalChannels,EexprSet-method	EexprSet-class
getWeights	EexprSet-class
getWeights,EexprSet-method	EexprSet-class
isDecimal	isDecimal
Layout-class	Layout-class
loadFromDB	loadFromDB
loadFromDB,EexprSet-method	loadFromDB
loadFromDB,Sample-method	loadFromDB
loadFromDB-methods	loadFromDB
MAtoG	MAtoG
MAtoR	MAtoR
mean.center	mean.center
meanWithoutNA	meanWithoutNA
medianWithoutNA	medianWithoutNA
multiapply	mapply
multiGrep	multiGrep
myGrep	myGrep
NormChips	smallALL
plot,Similarity-method	Similarity-class
plotSimilarity	plotSimilarity
print,Similarity-method	Similarity-class
progress	progress
publishToDB	publishToDB
publishToDB,EexprSet-method	EexprSet-class
replaceAll	replaceAll
replaces	replaces
Sample-class	Sample-class
show,SignalChannel-method	SignalChannel-class
SignalChannel-class	SignalChannel-class
Similarity-class	Similarity-class
sort,Similarity-method	Similarity-class
toEexprSet	toEexprSet
toEexprSet,MAList-method	toEexprSet
toEexprSet,RGList-method	toEexprSet
toExprSet	EexprSet-class
toExprSet,EexprSet-method	EexprSet-class
writeFigure	writeFigure
writeLatexTable	writeLatexTable
writeTable	EexprSet-class
writeTable,EexprSet-method	EexprSet-class
