Package: maDB
Version: 1.8.0
Date: 2007-04-19
Title: Microarray database and utility functions for microarray data
        analysis.
Author: Johannes Rainer <johannes.rainer@tugraz.at>
Maintainer: Johannes Rainer <johannes.rainer@tugraz.at>
Depends: R (>= 2.0.0), Biobase (>= 1.0.0), affy (>= 1.6.0), limma (>=
        1.8.0), methods
Suggests: geneplotter (>= 1.6.0), pgUtils (>= 1.5.0), annaffy (>=
        1.6.2), biomaRt (>= 1.8.2)
Description: maDB allows to create a simple microarray database to
        store microarray experiments and annotation data into it.
        Affymetrix GeneChip expression values as well as values from
        two color microarrays can be stored into the database. Whole
        experiments or subsets from a experiment (or also values for a
        subset of genes in a subset of microarrays) can be fetched back
        to R. Additionally maDB provides different utility functions
        for the microarray data analysis like functions to draw MA
        plots or volcano plots with the data points color coded
        according to the local point density or functions that allow a
        replicate handling of miroarrays.
biocViews: Microarray,TwoChannel,OneChannel,Visualization
License: LGPL version 2 or newer
Collate: tkfiUtils.R tkfiUnited.R tkfiUnitedDB.R Annotation.R
        geneRanking.R smalltkfi.R SearchPattern.R zzz.R
Packaged: Wed Apr 25 04:24:19 2007; biocbuild
Built: R 2.5.0; ; 2007-04-25 11:00:34; windows
