detectionCall              package:lumi              R Documentation

_E_s_t_i_m_a_t_e _t_h_e _d_e_t_e_c_t_a_b_l_e _p_r_o_b_e _r_a_t_i_o _i_n _e_a_c_h _s_a_m_p_l_e

_D_e_s_c_r_i_p_t_i_o_n:

_U_s_a_g_e:

     detectionCall(x.lumi, Th = 0.01)

_A_r_g_u_m_e_n_t_s:

  x.lumi: a LumiBatch object 

      Th: the threshold. By default, when the detection p-value is less
          than 0.01, we suppose it is detectable. For the old version
          of BeadStudio output (version 2 or earlier), the threshold
          will automatically transferred as 1 - Th, because in the old
          format, value close to 1 is suppose to be detectable. 

_V_a_l_u_e:

     Return the detectable probe ratio of each sample

_A_u_t_h_o_r(_s):

     Pan Du

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

     'lumiQ'

_E_x_a_m_p_l_e_s:

     ## load example data
     data(example.lumi)
     ## load example data
     data(example.lumi)

     ## estimate the detect call (percentage of expressed genes)
     temp <- detectionCall(example.lumi)
     print(temp)

