LumiBatch-class         Class LumiBatch: contain and describe Illumina
                        microarray data
MAplot-methods          MAplot of a ExpressionSet object
addNuId2lumi            Add the nuID information to the LumiBatch
                        object
boxplot-methods         boxplot of a ExpressionSet object
detectOutlier           Detect the outlier sample (or gene)
detectionCall           Estimate the detectable probe ratio in each
                        sample
estimateLumiCV          Estimate the coefficient of variance matrix of
                        LumiBatch object
example.lumi            Example lumiBatch object includes example data
hist-methods            Density plot of a ExpressionSet object
id2seq                  Transfer a nuID as a nucleotide sequence
inverseVST              Inverse VST transform
is.nuID                 nuID self-identification
lumi-package            A package for preprocessing Illumina microarray
                        data
lumiB                   Background correction of Illumina data
lumiExpresso            From raw Illumina probe intensities to
                        expression values
lumiN                   Between chip normalization of a LumiBatch
                        object
lumiQ                   Quality control estimation of the LumiBatch
                        object
lumiR                   Read in Illumina expression data
lumiT                   Transfer the Illumina data to stabilize the
                        variance
monoSmu                 Monotonic smooth method
monoSpline              Fitting a curve with monotonic spline
nuID2probeID            Mapping nuID into Illumina ProbeID
nuID2targetID           Mapping nuID into Illumina TargetID
pairs-methods           Pair plot of an ExpressionSet object
plot-methods            Plot of a LumiBatch object
plotSampleRelation      visualize the sample relations
plotVST                 plot the VST (Variance Stabilizing Transform)
                        function
probeID2nuID            Mapping Illumina ProbeID as nuID
rsn                     Robust Spline Normalization between chips
seq2id                  Transfer a nucleotide sequence as a nuID
targetID2nuID           Mapping Illumina TargetID into nuID
vst                     Variance Stabilizing Transformation
