useDynLib(beadarray)
import(tools, Biobase)

exportClasses(ExpressionSetIllumina, BeadLevelList)
exportMethods(initialize, show,se.exprs, exprs, "[","[[","$", phenoData, pData,sampleNames,samples, "se.exprs<-","exprs<-", dim, assayData, initialize, NoBeads, Detection, backgroundCorrect, QCInfo, copyBeadLevelList, combineBeadLevelLists, getProbeIntensities, getArrayData, arrayNames, numBeads)


export(BeadLevelNormalise, imageplot, DiffScore, SAMSummary, BeadChipSummary, medianNormalise, rankInvariantNormalise, plotBeadIntensities, plotBeadLocations, plotMAXY, plotMA, plotRG, plotXY,plotOnSAM, readQC, readIllumina, readBeadSummaryData, backgroundNormalise, readBeadSummaryTargets, readBeadTargets,findBeadStatus, boxplotBeads, createBeadSummaryData, findAllOutliers, qcBeadLevel, plotBeadDensities)

