boxplotBeads            package:beadarray            R Documentation

_B_o_x _p_l_o_t _o_f _b_e_a_d _i_n_t_e_n_s_i_t_i_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Function to produce box plots of the bead intensities from 
     different bead arrays

_U_s_a_g_e:

     boxplotBeads(BLData, whatToPlot = "G", arrays = NULL, log = TRUE,
               varwidth = TRUE, ...)

_A_r_g_u_m_e_n_t_s:

  BLData: a BeadLevelList object

whatToPlot: character string specifying which intensities to plot.
          Possibilities are '"G"', '"Gb"' for single channel data and
          '"G"', '"Gb"', '"R"' and '"Rb"' for two-colour data

  arrays: numeric vector of arrays to plot

     log: if TRUE log2 intensities are plotted

varwidth: logial, indicating whether box widths should be proportional
          to the number of values in each box plot

     ...: further graphical parameters to 'boxplot' function from
          graphics package

_D_e_t_a_i_l_s:

     Produces box plots or the raw intensities from a bead array

_V_a_l_u_e:

     Plot is produced on current graphical device

_A_u_t_h_o_r(_s):

     Matt Ritchie

_E_x_a_m_p_l_e_s:

     data(BLData)

     boxplotBeads(BLData)

