kroganBPMat2006          package:apComplex          R Documentation

_T_a_n_d_e_m _A_f_f_i_n_i_t_y _P_u_r_i_f_i_c_a_t_i_o_n (_T_A_P) _D_a_t_a _f_r_o_m _K_r_o_g_a_n _e_t _a_l. (_2_0_0_6)

_D_e_s_c_r_i_p_t_i_o_n:

     TAP data published by Krogan, et al. (2006).

_U_s_a_g_e:

     data(kroganBPMat2006)

_D_e_t_a_i_l_s:

     'kroganBPMat2006' is a matrix of the TAP data published by Krogan,
     et al. (2006).  The 2264 rows correspond to bait proteins and the
     5361 columns correspond to proteins found as hits in the TAP
     experiment and are named accordingly. The first 2264 column names
     are the same as the 2264 row names; bait proteins can also be
     found as hits by other baits, hence their inclusion as columns in
     'kroganBPMat2006'.  An entry of "1" in the ith row and jth column
     of 'kroganBPMat2006' indicates that bait protein i found protein j
     as a hit.  All other entries are "0".  There are a total of  "1"
     entries in the matrix, corresponding to the 63360 comemberships
     detected in the experiment.

     These data were obtained from the Primary Source -

_S_o_u_r_c_e:

     N Krogan et al. Global Landscape of Protein Complexes in the
     Yeast, S. Cerevisiae. Nature, 440:667-643, 2006.

_S_e_e _A_l_s_o:

     'yTAP','MBMEcTAP','SBMHcTAP','UnRBBcTAP','HMSPCI'

_E_x_a_m_p_l_e_s:

     data(kroganBPMat2006)
     which(kroganBPMat2006[1,]==1)

