gavinBP2006            package:apComplex            R Documentation

_T_a_n_d_e_m _A_f_f_i_n_i_t_y _P_u_r_i_f_i_c_a_t_i_o_n (_T_A_P) _D_a_t_a _f_r_o_m _G_a_v_i_n _e_t _a_l. (_2_0_0_6)

_D_e_s_c_r_i_p_t_i_o_n:

     TAP data published by Gavin, et al. (2006).

_U_s_a_g_e:

     data(gavinBP2006)

_D_e_t_a_i_l_s:

     'gavinBP2006' is a matrix of the TAP data published by Gavin, et
     al. (2006).  The 1752 rows correspond to bait proteins and the
     2551 columns correspond to proteins found as hits in the TAP
     experiment and are named accordingly. The first 1752 column names
     are the same as the 1752 row names; bait proteins can also be
     found as hits by other baits, hence their inclusion as columns in
     'gavinBP2006'.  An entry of "1" in the ith row and jth column of
     'gavinBP2006' indicates that bait protein i found protein j as a
     hit.  All other entries are "0".  There are a total of 19105 "1"
     entries in the matrix, corresponding to the 19105 comemberships
     detected in the experiment.

     These data are available in the IntAct repository under Gavin et
     al - 2006.

_S_o_u_r_c_e:

     Gavin, et al.  Functional Organization of the Yeast Proteome by
     Systematic Analysis of the Yeast Complex. Nature 440, 631-636
     (2002).

_S_e_e _A_l_s_o:

     'yTAP','MBMEcTAP','SBMHcTAP','UnRBBcTAP','HMSPCI'

_E_x_a_m_p_l_e_s:

     data(gavinBP2006)
     which(gavinBP2006[1,]==1)

