15cab3eea51740e794e50e6e0a5b6e54 *CONTENTS
3a53cad6149f5b75ac27bdfe5d13ab3c *DESCRIPTION
d04fd2060f6a851d436ebc3184e53653 *INDEX
dd89c2e73d0247fe37ce7158ecef3191 *Meta/Rd.rds
74b25b56d11d36917580ea518561e6a6 *Meta/data.rds
38462996992ae2ac61eab9615f19ad91 *Meta/hsearch.rds
e522442ed450c3537f913ce4a1286231 *Meta/nsInfo.rds
7924b9f1b85d98304530bad9ce2c9192 *Meta/package.rds
6710c62e45a8ccfa71a474eb246785cc *Meta/vignette.rds
8e2205fff9fd38d77ca26d174b131c35 *NAMESPACE
e70e1ec4c52b826c85e13b63113c9f73 *R-ex/Rex.zip
f07d3015c4220dea7a7be8c741d2985b *R/ScISI
63eee96092bdaa9931c87f1aace81933 *R/ScISI.rdb
17d63e87aec1c6a7004ffed7e779b10e *R/ScISI.rdx
8a636eee22ab2f6601d65e83cd679ef9 *Scripts/C1G.rda
61f5b7b6e87d463036d9ed068d6d9fce *Scripts/Comments
00e6f2356b5f5116a6800cd3ff0c0f47 *Scripts/Comments2
e404aade49412593e4ace87b1acb6bdf *Scripts/ckCrystStruct.R
2e961514e6001e0e923deb44c174c6e3 *Scripts/createMipsY2HMatrix.R
e41ef6be4313143c370171794f3d7cfe *Scripts/createScISI.R
c9418aff1f9aa03c50311a15de9d3d04 *Scripts/creatingScISI.Rnw
3e5b729cbe4340f87c0880711155cc9a *Scripts/estGavin02.R
07e5475297242ee0065e1158afa16be4 *Scripts/estGavin06.R
0adf3e106f855193b0f70d3ca30139a1 *Scripts/estHo02.R
a8b4bb7c2779ed145422800304f32e6f *Scripts/estKrogan04.R
92a152170ac52d9ba324c5392b7d55af *Scripts/estKrogan06.R
ea7733524feaf47622ce949aa227844d *Scripts/estimateComp.R
6b3116c9133cf30b653d3e8648362efe *Scripts/getLocOrfs.Rnw
6481fc86488f5a62423cc953fc683727 *Scripts/getMipsY2HInfo.R
3c6dd8bfabce65c818145ec768f5cec7 *Scripts/graphStatistics.Rnw
ace99f430b33eb54333a65fac4f796a1 *Scripts/notesMips.R
a13b57441581b714eb014ce828bc6985 *Scripts/notesOtherComps
c0e07acaf95a2a148a403bd7006fddcf *Scripts/sim.R
7a080df2e2afa524baede1b532388d26 *Scripts/test1.R
19cdf9b416351d8d0c898b7186bf92af *TODO/CrystalStructures
e2a2027186190b8ef382cad1b366b82e *TODO/Validate
79eda637afbe7db185596bf3e6cbfffe *chtml/ScISI.chm
c422242e9d78c853a594d7a0c90ddaba *data/Rdata.zip
0aa6762a8df733d127324b7b924fa629 *data/filelist
3f274292e6fb21a9dd6ca89dcea7c145 *doc/Rplots.ps
811cef6c42febe910327509bd8f1c453 *doc/ScISI.Rnw
2aa39be2f10fac5d397011d7612e1302 *doc/ScISI.pdf
20b2f4be72aec38fe53c3a3d76cdc72f *doc/ScISIsupp.Rnw
76f483754eb55d0e955a52cd91b9d181 *doc/ScISIsupp.pdf
7dffc1ba815f7a4590b1412c30943076 *doc/bioc.bib
1aa9b61e97517413288b9e17246aa3c5 *doc/index.html
355734835a99b93b2321264354ac83da *doc/vignette.Rnw
ee1e6db4a54f459d9f9b30b514155f51 *doc/vignette.pdf
3e00e918b383700d3c987da731529271 *extdata/Arp2_3_complex.jpg
3e00e918b383700d3c987da731529271 *extdata/Arp2_3_complex.png
05375178bc80b0e12268c182291cc15a *extdata/PPI_141105.tab.gz
0a5c1e07cb76195e0aade591119413e3 *extdata/complexcat.scheme
6b2ce5296b7f82656af371fd82a12aae *extdata/complexcat.scheme.edit
570c688db449835f5135d7a5385c049e *extdata/complexcat_data_14112005.gz
f81d10292fc810f3f19a5e9fdec6ce6a *extdata/complexcat_data_18052006.gz
24c48092b6d1cbcda77a2553dc7ac612 *extdata/complexcat_data_20062005.gz
200ca2aca14b12de19a6dcaa7238984a *extdata/evidencecat.scheme
a28f70ebb3bc4b8732c8bec2da5d9d79 *extdata/graphs/Readme
225f66c316032d89cc13263129303a5e *extdata/graphs/arp23AM.rda
4c6cf6010cd119d85f61a8b7c4e3ff88 *extdata/graphs/arp23BP.rda
6cb1bc35a26c00a0d29a55a2d73819fd *extdata/graphs/arp23BPG.rda
c1b2a2d3cdf922cb8188f13d2338830d *extdata/graphs/arp23CMG.rda
82bd2c84c5055eff08a82ba5bdb4c6f3 *extdata/graphs/arp23CMM.rda
aabec5837baf893ea62032d43ea3f854 *extdata/graphs/arp23G.rda
9b8f423165e92980afc0fc6bf6f84e99 *extdata/graphs/cfiaAM.rda
37d1472fafbcaa1dfb7099d84992b67c *extdata/graphs/cfiaCMG.rda
9a2b1117960175884c3210f6b05e5746 *extdata/graphs/cfiaCMM.rda
233cc23dd171f9589ade6cf6a0d712d8 *extdata/graphs/cfiaG.rda
cf003a9b90823c91f6604750d792d058 *extdata/graphs/ppi1.rda
d10c0eb4eaa5b5e8d2867e5e2d32af40 *extdata/graphs/ppi1G.rda
3014427a4957aa6d40d511161d5a927a *extdata/graphs/ppi2.rda
589b6347c9923c33b9e8e76a33eb93b4 *extdata/graphs/ppi2G.rda
ca9989c9b6b7ce20051dc7fa3f449b82 *extdata/localization/allOrfData.txt
32583a85ebe0356656c57107eaad2993 *extdata/pathway/biochemical_pathways.tab
ad22462813c63865f71ed40c0e1e3c21 *extdata/pathway/keggM.rda
758522d65fff0f8e08d62ce677d24baf *extdata/pathway/sgdPathM.rda
f9a2fee5ff6790dd539944e98e145808 *extdata/protein_network_large.jpg
60f93c4072f86de586f47b6b813e20e4 *help/AnIndex
bcb151c287892ef0da8bc11227bf0873 *help/Rhelp.zip
f0b9be84f277fc38968c2b6d180cb0d6 *html/00Index.html
ee6d95c1292662fda9e9af06eee10738 *html/Desc-methods.html
6863dd592d9e715a47866bb7404533ac *html/ID-methods.html
41d3995da94dc32f3e7aed2768a726d1 *html/JaccardCoef.html
92ef3fe9da8535ed87f863da5137a779 *html/ScISI.html
73e536077cafc5a1dc399585b9d801a9 *html/ScISI2html.html
55f9668a74ce1ae96edf8d2a9b854a54 *html/arp23.html
b4e5440752309dd5c01574734ed99762 *html/arp23G.html
fb6d2d84771e9237d983c8e04e017edb *html/arp23Orf.html
00ace38cb1723c221135c366236be3c4 *html/arp23Y2HG.html
a6d7fcd7d17449ab32c1c3ea56584952 *html/calcGraphStats.html
c1cb280d6856aceb41f51e0234b58f9c *html/cfia.html
80c72b041181e6173ec6548a92d6fafd *html/cfiaOrf.html
f7247c35cfaf89f8dd0767acfaa527c1 *html/checkComplex.html
4a06b685c407d1e26da8dbb783e795f1 *html/checkSGN.html
3684ace54cf096a61355b7479c751dea *html/compBijection.html
addd621e9bb0743e2f69abf62c2afcc2 *html/compareComplex.html
bc37258cb43fff2a30c7e7b9e36cc736 *html/createGODataFrame.html
f0a802451554d4db3949988580219931 *html/createGOMatrix.html
fab646fbe98085345a138a5c3ae5419e *html/createMipsDataFrame.html
abc87fb577361b356ab8b572c548e446 *html/createMipsMatrix.html
61f26f4120f14a78d58242c5a7b968dd *html/createYeastDataObj.html
c79165fe4b4e64d10f06733e3b0d0f6c *html/dataS.html
b56c62f976cfa8204cbcc2e04132fa6a *html/eAt.html
21977404b8b81c38273fdef76c90de69 *html/eAt2.html
9dcdc714228d5ca958c1d7d609d1eccf *html/edgeProp.html
f6f6187a918548b9d300007476605f07 *html/egEBI16112.html
adc1f2371a85fb54aa96856c0baa3200 *html/expStats.html
b18c6feaaeb55799eff5b2aa2f8c4ec2 *html/findSubComp.html
464edcf90ffe6d52ebe993143860bcb1 *html/gavin2mergeMG.html
673a10026bddf975324bab8670ae0fe8 *html/getAPMSData.html
38249fb7200bdda276e0d13202245019 *html/getGOInfo.html
ccc64358093f23cac10aabdafea53453 *html/getLocOrfs.html
e1d8bcede44fe7d0fc8c3954f4451f66 *html/getMipsInfo.html
f9d6a67eb8851cd1d7181a7896f8eb6a *html/getURL-methods.html
dfb4810cce21e532d85af6e128a2c3df *html/graphSumStats.html
367eb720ecd90fe3d5249b80a6fc0cf5 *html/ho2mergeMGG.html
deb7052e4664ef613900b7b07db50de3 *html/krogan2mergeMGGH.html
ae6c60fa7d6c5307aa1e37939575ee2a *html/list2Matrix.html
e56e99282400737126620422a0d7c970 *html/locScISI.html
74990f42e822facc3c5f78e623c7869a *html/mapping2SysG.html
56d465322a76d2aefd1c586339730e09 *html/mappingsG.html
80a8ce2c796eefd38512d2f6857058c6 *html/maximizeSimilarity.html
55bd5dde98f9a85d4d817123846e048c *html/meanDeg.html
8a6e8c0422f02504a14daa728401f601 *html/mergeBGMat.html
21ff6bcb1d6c9a1ca8bf43c9019392d7 *html/mips2go.html
070e4068d59fc45d2528d780d18a54a9 *html/nAt.html
715b6167e007e6067c178230a9aa9e57 *html/nAtMap.html
e8a0f1559f249b6530e968225262637c *html/nucComp.html
b1233f394d75bdfd7f2de41c68621c4e *html/recCompSize.html
85b01c125755485cade3a6d075cbfc0e *html/redundantM.html
f08ba69086006d9a92d55d258bdeaa91 *html/rmByEvi.html
c58ca6b9fd9ef24b33aeb495d81b3a19 *html/runAlignment.html
9cc71f7bfa0311c4e2e28b0528d2cd4d *html/runCompareComplex.html
ca680643c3ac8ae4b4cd57ac6a919e42 *html/subCompM.html
5032fbd944c41f5a481da2965ffa7024 *html/sumStats.html
1fc641d24ff6b48572d37d9aab3f329a *html/unWantedComp.html
37828508c245b646b6e4edfc1c520781 *html/xtraGO.html
801c5a0ecf819dc835bfb8665fffc8dd *html/xtraGONodes.html
18778b2472fd5c5ea0c40e4c4f2cb19e *html/yeastData-class.html
5978f6963a4904b4f10ac98110673fc8 *latex/Rhelp.zip
75037d5cabb211100e2cb749df4dccfa *man/ScISI.Rd.gz
