getAPMSData              package:ScISI              R Documentation

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_D_e_s_c_r_i_p_t_i_o_n:

     This function will generate the bipartite graph (BG) incidence
     matrix from either the experiments of Gavin, Ho, or Krogan.

_U_s_a_g_e:

     getAPMSData(author = NULL)

_A_r_g_u_m_e_n_t_s:

  author: A character - name of the lead experimentor. It can be either
          "Gavin", "Ho", or "Krogan"

_D_e_t_a_i_l_s:

     This function is called to gain access to the protein complex
     co-membership bipartite graph matrices stored in the apComplex
     package.

     The matrix that is returned will be an incidence matrix with yeast
     standard gene name indexing the rows and ad hoc protein complex
     names indexing the columns.

     The matrix that is obtained from apComplex database will be the
     multi-bait, multi-edge (MBME) estimate from each of the
     experiment. We have elected to take the MBME estimates rather than
     the cumulative estimates because the MBME's are generated from
     more statistically  significant data sets.

_V_a_l_u_e:

     BG Incidence Matrix with rows indexed by proteins and columns by
     complexes

_A_u_t_h_o_r(_s):

     Tony Chiang

_E_x_a_m_p_l_e_s:

     getAPMSData("Gavin")

