createMipsMatrix            package:ScISI            R Documentation

_A _f_u_n_c_t_i_o_n _t_o _c_r_e_a_t_e _t_h_e _b_i_p_a_r_t_i_t_e _g_r_a_p_h _i_n_c_i_d_e_n_c_e _m_a_t_r_i_x _f_r_o_m
_M_I_P_S _p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes the output from the 'getMipsInfo' function and
     creates the bipartite graph incidence matrix where the rows are
     indexed by proteins and colunms by protein complexes (given by the
     MIPS ID's).

_U_s_a_g_e:

     createMipsMatrix(mipsL)

_A_r_g_u_m_e_n_t_s:

   mipsL: A list consisting of the two items: mipsL$Mips is a named
          list of character vectors. The names correspond to MIPS
          protein complexes and the character vector correspond to the
          proteins within that complex; and mipsL$DESC is a named
          character vector where the names are the protein complex MIPS
          ID and the values is the description of the complex.

_V_a_l_u_e:

     A bipartite graph incidence matrix of the MIPS protein complexes
     where rows are indexed by proteins names  and colunms by the MIPS
     ID's pre-fixed with "MIPS-".

_A_u_t_h_o_r(_s):

     Tony Chiang

_R_e_f_e_r_e_n_c_e_s:

     mips.gfs.de

_E_x_a_m_p_l_e_s:

     mips= getMipsInfo(wantSubComplexes = FALSE)
     mipsM = createMipsMatrix(mips)

