createGODataFrame           package:ScISI           R Documentation

_A _f_u_n_c_t_i_o_n _t_o _c_r_e_a_t_e _a _D_a_t_a_f_r_a_m_e _f_r_o_m _t_h_e _G_O _p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes a named list (the names are the GO ID's
     representing some protein complex and the list elements are
     character vectors consisting of the members of each particular
     complex) and an Bipartite Graph Incidence Matrix and creates a
     dataframe with three columns: complex name, GO ID, and complex
     description.

_U_s_a_g_e:

     createGODataFrame(cMembers, goMat)

_A_r_g_u_m_e_n_t_s:

cMembers: Named list with GO ID's as names and character vector
          consisting of proteins of the respective complex

   goMat: Bipartite Graph Incidence Matrix

_D_e_t_a_i_l_s:

     This function takes the output parameters of 'createGOMatrix' and
     'getGOInfo' and creates the bipartite graph incidence matrix.

_V_a_l_u_e:

     Dataframe: 

   names: The names of the GO Complexes

      ID: The GO IDs' of the complexes

description: The description give by GO

_A_u_t_h_o_r(_s):

     Tony Chiang

_R_e_f_e_r_e_n_c_e_s:

     www.geneontology.org

_E_x_a_m_p_l_e_s:

     go = getGOInfo(wantAllComplexes = FALSE)
     goM = createGOMatrix(go)

     createGODF(go, goM)

