ScISI2html               package:ScISI               R Documentation

_A _f_u_n_c_t_i_o_n _t_h_a_t _g_e_n_e_r_a_t_e_s _a_n _h_t_m_l _p_a_g_e _f_o_r _t_h_e _G_O _a_n_d _M_I_P_s
_p_r_o_t_e_i_n _c_o_m_p_l_e_x_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes a vector or url's and a vector of the protein
     complex description names (known names of the protein complexes)
     and creates an html file that lets the user link to each of the
     protein complex description site based on the particular url.

_U_s_a_g_e:

     ScISI2html(urlVect, linkName, filename, title,
     othernames, table.head, table.center = TRUE, compSize=NULL)

_A_r_g_u_m_e_n_t_s:

 urlVect: A character vector containing the url for each speficied
          protein complex

linkName: A character vector containing a description name for each of
          the url's in urlVect that will be the anchor for the url

filename: The output file; an html file written to the home directory

   title: The title given to the html file

othernames: Other titles that are needed; sub-titles

table.head: The title for the table

table.center: Logical; to center the table

compSize: A numeric vector of the complex sizes for the various protein
          complexes of GO and MIPS

_V_a_l_u_e:

     An html file written to the user's home directory. The file
     contains a page of links (given by the url's) where each link is
     anchored by a description name for each url.

_A_u_t_h_o_r(_s):

     Tony Chiang

_E_x_a_m_p_l_e_s:

     go = getGOInfo(wantAllComplexes = FALSE)
     goM = createGOMatrix(go)
     goDF = createGODataFrame(go, goM)
     goOb = createYeastDataObj(goDF)
     goNames = colnames(goM)
     url = vector(length = length(goNames))
     for(i in 1:length(goNames)){
     url[i] = getURL(goOb, goNames[i])
     }
     ScISI2html(url, goNames, test, GO Complexes

