AnnotatedSnpCallSet-class
                        Class "AnnotatedSnpCallSet"
AnnotatedSnpCopyNumberSet-class
                        Class "AnnotatedSnpCopyNumberSet"
AnnotatedSnpSet-class   Class "AnnotatedSnpSet"
addFeatureData-methods
                        Method for Function addFeatureData
alleleA                 Accessor for the A allele
alleleB                 Accessor for the B allele
annSnpset               AnnotatedSnpSet object
centromere              Coordinates of centromere
chromosome-methods      Accessor for chromosome SNP annotation
chromosomeAnnotation    chromosome annotation
chromosomeSize          Get size of chromosome in number of base pairs.
coerce-methods          Methods for Function coerce
copyNumber-methods      Extracts copy number estimates
cytoband                Start and stop sites of cytoband
dbSnpId                 The dbSNP identifier.
enzyme                  Enzyme used to digest DNA
fData                   Accessor for the data.frame in featureData
fragmentLength          Accessor for the fragment length
getSnpAnnotation        Retrieves SNP-level annotation
hapmap                  Data from the hapmap project
initialize-methods      Generates instances of SnpSet objects
plotCytoband            Adds cytoband to plot.
plotSnp                 Plots copy number and genotype calls.
position                Physical position of SNP on chromosome
show-methods            show methods
showSummary             Displays descriptive statistics for a sample.
smoothSnp               A simple nonparametric smoother for genotype
                        and copy number
summary-methods         Methods for Function summary
unsplitS4               Combines a list with elements that are
                        AnnotatedSnpSets into one AnnotatedSnpSet.
