be777bffe9111263c6903bca5cc28848 *CONTENTS
099b9f2b7f9ebdd787f9ca27432a51af *DESCRIPTION
f2237edd7ead30d06d62a94bf815774d *INDEX
25a80a1535b0135b854c4069fb9ced79 *Meta/Rd.rds
efca71b78a735acff6cc1e3234226501 *Meta/hsearch.rds
39afc9783ba5fa8601a2f4736705f750 *Meta/nsInfo.rds
c317d209788ef41b6f12d441a17a42c1 *Meta/package.rds
589d09372bbce955db4dfa133aaa7b46 *Meta/vignette.rds
adad3ccb394125d24b591d99b6b27f6f *NAMESPACE
f02d9240e8f7ad24d5337b2e63c1d5dc *R-ex/arrayImage.R
4f8b08fbee1017eda718fae4653931ee *R-ex/asExprSet.R
e0e66760fb152f854214bd2813ea12b5 *R-ex/autocorr.R
eb094a0dec479a3129eee8b0243d167b *R-ex/chipAlongChrom.R
a445834ec8e87b206732281989a0086d *R-ex/computeRunningMedians.R
748b15038e08c1df04c4cbf8053d5002 *R-ex/corrPlot.R
7bb4bfd9d289af49e2afaa0be689fe1c *R-ex/findPeaksOnSmoothed.R
20e00cb3656e1ca78e129d14d12ebc99 *R-ex/ftr2xys.R
e2c64c4984e08c0550da0a8fec6e0bed *R-ex/newPeak.R
47ea405170ba8e4f04f9956fa9430e3b *R-ex/peakByThreshold.R
60b3e772c807af7c5db7cff8eb127bb7 *R-ex/peakClass.R
0d8d93c04b987fd231d1dd6fe08b19be *R-ex/plotAutocorr.R
474fbf412c55f810b7c0d6b1dddf3c6f *R-ex/plot_peak.R
d98b677b8246d934b012cfb8be33fc4a *R-ex/preprocess.R
a186f74b58daf7e75c5125a61337f75e *R-ex/readNimblegen.R
85a1ba73f520a24701de6aaa02135c5c *R-ex/relatePeaks.R
8a7d0b1db3001211e5bfc96514887fc9 *R-ex/sliding_median.R
bc48cb7570877ff0aba815cf922d3cd0 *R-ex/sliding_quantile.R
f57249e458f39c7b5e855acc6ed19220 *R/Ringo
ab71de888cfefbf87cecffbe2bc782fe *R/all.rda
69746bcc62d0325c80b7fbeb86718bff *chtml/Ringo.chm
838906b8b452991e92efbb194899f365 *doc/Makefile
7eeae84a3d72de55067e5c0377a2f58f *doc/Ringo-Bibliography.bib
0e2407aea8b1fde05be3807431832a2d *doc/Ringo.Rnw
5331137f54a9797949eb50b7e628fd90 *doc/Ringo.pdf
7aab7e59649df717eebe2010ee204368 *doc/Ringo.tex
c764a26ecf0d6023b5c753cbc8333cac *doc/index.html
b2869604107f8fb8804880932077f732 *exData/55773_532_pair.txt
baa050b7abd30a103be0397a3ebbe042 *exData/55773_635_pair.txt
cf3f0dee85db26db0eb171fd91d58b04 *exData/56577_532_pair.txt
fb5d9e71a586b1261c270465da41e494 *exData/56577_635_pair.txt
4986b44700e0f487f13b00e4c47b983b *exData/exampleProbeAnno.rda
62a62c3fb4377043518f1bf32b721c85 *exData/exampleX.rda
c5b83861c5284f845e89ecbbcd12e91a *exData/example_files.txt
679a785d5c29d08292509c777c9f55ce *exData/spottypes.txt
03eb698f7c807d4467a13fec2d1b3667 *help/AnIndex
568c0d24e261a916ba37ee0b4bd1b451 *help/Ringo-internal
05ecc3feaf02e3216770e9ae081903e3 *help/arrayImage
41343d6f24bda036e8207a1f1af85bfe *help/asExprSet
675fc4e26d4fc20af8fdb1562eccf719 *help/autocorr
7d2eee5d0683cea70c87b9ce9141c404 *help/chipAlongChrom
bf452d435c72aa23e36a0c170fc694dc *help/computeRunningMedians
565da7bb08f32940e4e80d00e237cfe1 *help/corrPlot
196e7b3d5769ca3c882b65536c6bb767 *help/findPeaksOnSmoothed
debe7aa9781eaee0b775e9772917eb5a *help/ftr2xys
3608b08293d15e4a787ebab8ac3f3837 *help/newPeak
80a9b295b2a002fdfc50c7f0674b88c8 *help/nimblegenNorm
93a43bdb3b79cb8e78476b350c6a87a5 *help/peakByThreshold
f2353b68c2af6082669ecd2ca2fbff5f *help/peakClass
223f6c8228c1177ff0d4c38da5a72d47 *help/plotAutocorr
d0d2c47569c6501f2dd90bf48c0b8521 *help/plot_peak
8bf3c5fdfa9e2e8124e3f0c16d34725c *help/preprocess
d51f2cfdb993ae72bcf49ecffc7f4097 *help/readNimblegen
a7cc01d56d8b014ea8fc937973937ee6 *help/relatePeaks
6b20fb9259aa9b4bd2fab18ad06e83b1 *help/sliding_median
45a2ddfa235c255bd895d035b1312bb0 *help/sliding_quantile
dabcfbf1ef93ff10bd4498fba60b7037 *html/00Index.html
c9cb5f388113fbb30771c98eec4104a0 *html/Ringo-internal.html
75573cce13f334069509963b2cdab91a *html/arrayImage.html
1ed82a3706544370c99eb92265240325 *html/asExprSet.html
9c608ea0710a91ab8b17dd83d95a1f17 *html/autocorr.html
f9e2b5234bf5baa55e726486be0a721a *html/chipAlongChrom.html
ddf0396158d575e1875a4643fdbf43ca *html/computeRunningMedians.html
892a71b851e37e13f15d06c5bfb2a6a9 *html/corrPlot.html
2398d65c793c8203bace1c17cf48c894 *html/findPeaksOnSmoothed.html
101abd3b7411374d746f7832796bc4e5 *html/ftr2xys.html
fd8595caca58a0b899fca4feaabdc697 *html/newPeak.html
feb949957e51023b65cf79679c0d5579 *html/nimblegenNorm.html
a6e12734e13b8d9e5c50db7120cea21e *html/peakByThreshold.html
0d258401dffe1a7ea3d5bccb78f608ef *html/peakClass.html
b5f7087826f3c166d80c875ff7c92791 *html/plotAutocorr.html
1471ea5398df721995defbb94d832e69 *html/plot_peak.html
cac0cf206134332538aec0e97c11685d *html/preprocess.html
9da5eae017f6f5b0a867fd54bf80fdd4 *html/readNimblegen.html
ec81272ffbb586883f067443f8c7c12e *html/relatePeaks.html
4749119c51868d9f14b65b1347ab0be6 *html/sliding_median.html
8d41faedaef75f7c935e365bc0896674 *html/sliding_quantile.html
f17ad8ddc167e981cefed8ba5c604b1e *latex/Ringo-internal.tex
22396edd1184df0f36e90bc4d4962403 *latex/arrayImage.tex
44b86f7c9361a7dce58d1732bf8a1544 *latex/asExprSet.tex
28c5c6c90aa332553317beae0a3aac32 *latex/autocorr.tex
296dbca3863cf98d3c81d84902bf1e83 *latex/chipAlongChrom.tex
49d38206223644beabdabe3fd9df5771 *latex/computeRunningMedians.tex
dd55906a708fc0ad65de29b6a0a10bd3 *latex/corrPlot.tex
8e9a89b953c3a1128b6165b35178479f *latex/findPeaksOnSmoothed.tex
cfc19edc1753bf8dea1b156090afcff3 *latex/ftr2xys.tex
3b05534698c3ff66881d0c7368a91fba *latex/newPeak.tex
3150b0fa8aac91e5262ce913edb31c36 *latex/nimblegenNorm.tex
b02a9b0ce378913d3b1767e4681a927c *latex/peakByThreshold.tex
ea6640976790933d9d4f5a6207d2ca12 *latex/peakClass.tex
a4593316f400dba80e22f254ef78a456 *latex/plotAutocorr.tex
4af424bac802a5f6ac4330cbe5f295c0 *latex/plot_peak.tex
a95ce6735d50637b9b0a96d97bfeee9d *latex/preprocess.tex
15ead692314d7c5a279930b61401df2c *latex/readNimblegen.tex
a596c7f2c58fdb8ca3821d28bc8237ca *latex/relatePeaks.tex
2ca39dbfcac8880b06d64598e261e1f3 *latex/sliding_median.tex
6bd17f58c49ef3102a47aa1abdbed182 *latex/sliding_quantile.tex
a4debe3417964e6e4495eb313add4925 *libs/Ringo.dll
fb1cbc5c25473e876e1f2811008e1985 *man/Ringo.Rd.gz
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
03e2250c84800725faddf439f287b14b *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
0eac9fbda0fd79f6abf3e2a350ab5097 *scripts/makeProbeAnno.R
