SNPperMeta-class           package:RSNPper           R Documentation

_C_l_a_s_s "_S_N_P_p_e_r_M_e_t_a" _r_e_p_r_e_s_e_n_t_i_n_g _d_a_t_a _o_n _S_N_P_s _c_u_r_a_t_e_d _a_t _s_n_p_p_e_r._c_h_i_p._o_r_g

_D_e_s_c_r_i_p_t_i_o_n:

     gives immediate access to location and allele, methods extract
     material on allele frequencies in different populations, and
     relationships to particular mRNAs/genes.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("SNPperMeta",
     ...)'. The extend matrix (so that colnames are propagated).

_S_l_o_t_s:

     '._D_a_t_a': Object of class '"matrix"' see example 

     '_p_o_p_D_e_t_a_i_l_s': Object of class '"data.frame"'  information on
          populations that have been genotyped for reference 

     '_g_e_n_e_D_e_t_a_i_l_s': Object of class '"data.frame"' information on mRNAs
          (typically) near the SNP; putative SNP roles (in Promoter, 3'
          UTR, or Exon) are often denoted 

     '_s_u_b_m_i_t_t_e_r_s': Object of class '"ANY"' unprocessed XML on submitter
          identity. 

_E_x_t_e_n_d_s:

     Class '"matrix"', from data part. Class '"structure"', by class
     '"matrix"'. Class '"array"', by class '"matrix"'. Class
     '"vector"', by class "matrix", with explicit coerce. Class
     '"vector"', by class "matrix", with explicit coerce.

_M_e_t_h_o_d_s:

     popDetails, geneDetails, submitters functions are available.

_A_u_t_h_o_r(_s):

     VJ Carey <stvjc@channing.harvard.edu>

_R_e_f_e_r_e_n_c_e_s:

     <URL: snpper.chip.org>

_E_x_a_m_p_l_e_s:

     if (interactive()) {
     lkc = SNPinfo("6060535")
     lkc
     popDetails(lkc)
     geneDetails(lkc)
     lkg = geneInfo("CPNE1")
     lkg
     dim(allGeneMeta(lkg))
      }

