addManifest	addManifest
annotation,beadQC-method	beadQC-class
annotation<-,beadQC,ANY-method	beadQC-class
annotation<-,beadQC-method	beadQC-class
batchAnalysis	batchAnalysis
beadAnalysis	beadAnalysis
beadData-class	beadData-class
beadQC-class	beadQC-class
boxplot,beadData-method	beadData-class
boxplotArrays	boxplotArrays
boxplotQC	boxplotQC
clusterplot	clusterplot
cutoff	cutoff
detectionCalls	detectionCalls
detectionCalls,beadData-method	beadData-class
detExprs	beadData-accessor
detExprs,beadData-method	beadData-class
dotplotArrays	dotplotArrays
dotplotQC	dotplotQC
examplebeadData	examplebeadData
examplebeadQC	examplebeadQC
extract	extract
fileOrigin	beadData-accessor
fileOrigin,beadData-method	beadData-class
fileOrigin,beadQC-method	beadQC-class
filterData	filterData
getAnnot	getAnnot
getArrayStats	getArrayStats
getDet	getDet
getExprs	getExprs
getID	getID
getQC	getQC
getQC2	getQC2
htmloutput	htmloutput
HumRef8	HumRef8v1
HumWG6	HumWG6v1
multiDensity	multiDensity
multiecdf	multiecdf
nGenes	beadData-accessor
nGenes,beadData-method	beadData-class
normalise	normalise
normMethod	beadData-accessor
normMethod,beadData-method	beadData-class
nSamples	beadData-accessor
nSamples,beadData-method	beadData-class
pairs,beadData-method	beadData-class
param	beadData-accessor
param,beadData-method	beadData-class
pc	pc
plot,beadData,missing-method	beadData-class
plotSamples	plotSamples
readBead	readBead
readManifest	readManifest
readQC	readQC
sampleQC	beadData-accessor
sampleQC,beadQC-method	beadQC-class
scatterPlot	scatterPlot
signalMeans	beadData-accessor
signalMeans,beadData-method	beadData-class
summary,beadData-method	beadData-class
write.beadData	write.beadData
writeQC	writeQC
[,beadData-method	beadData-class
[,beadQC-method	beadQC-class
