plotSamples           package:BeadExplorer           R Documentation

_Q_C _s_a_m_p_l_e _p_l_o_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Produces QC plots for each sample on the array

_U_s_a_g_e:

     plotSamples(rbeadData, nbeadData, beadQC, savegraph = "png", width = 1200, height = 800, extension = "_Samples", 
     col = NULL, annotation = TRUE, names = sampleNames(nbeadData), verbose = TRUE, ...)

_A_r_g_u_m_e_n_t_s:

rbeadData: UnNormalised 'beadData-class' object 

nbeadData: Normalised 'beadData-class' object 

  beadQC: 'beadQC-class' object 

savegraph: Character specfiying output graph type: "png", "bmp", "jpeg"
          or NULL for graph in console 

   width: Width in pixels of output graph

  height: Width in height of output graph 

extension: Suffix to apply to analysis name to create the filename 

     col: A vector of colours used to plot each sample in the
          'beadData-class'object, NULL uses default: rainbow

annotation: Logcial, specifying whether annotation data should be added
          to the plots 

   names: Names used to represent each sample, default is sample names 

 verbose: Logical,specifying if a commentary should be outputted 

     ...: Arguments passed to 'plot'

_D_e_t_a_i_l_s:

     Produces QC plots for each sample on the array.  Often where
     filenames are long, these can get cut-off by the plot.   In this
     case it is better to specify- names=1:6 (or greater if the number
     of samples is more).  See package description for more
     information.

_V_a_l_u_e:

     Nothing

_A_u_t_h_o_r(_s):

     Gareth Elvidge gareth.elvidge@well.ox.ac.uk

_S_e_e _A_l_s_o:

     See Also as 'help'

_E_x_a_m_p_l_e_s:

     data(examplebeadData)
     data(examplebeadQC)
     ndata<-normalise(examplebeadData)
     plotSamples(examplebeadData, ndata, examplebeadQC)

