getQC2             package:BeadExplorer             R Documentation

_G_e_n_e_r_a_t_e _Q_C _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Generates QC data from version 2 of BeadStudio

_U_s_a_g_e:

     getQC2(beadData, qcfile)

_A_r_g_u_m_e_n_t_s:

beadData: Object of class 'beadData-class' 

  qcfile: File path of the BeadStudio (v2) qc file that corresponds to
          the 'beadData-class' object 

_D_e_t_a_i_l_s:

     Generates QC data using the beadData object and its corresponding
     qcfile.  The qcfile is produced from BeadStudio version two. In
     contrast to version one of BeadStudio, version 2 requires the user
     to save the qcfile manually as a '.txt' file.  This can be done by
     selecting the 'Control Probe profile' tab in BeadStudio (V2) and
     saving this data.  A mapping file with this package is used to map
     the Illumina 'ProbeID' to the control type. Currently only Human
     WG-6 BeadChips mapping files are supplied but others will be added
     in the future.  The mapping file used is selected from the array
     type  of the beadData argument.

_V_a_l_u_e:

     An object of class 'beadQC-class'

_N_o_t_e:

_A_u_t_h_o_r(_s):

     Gareth Elvidge gareth.elvidge@well.ox.ac.uk

_S_e_e _A_l_s_o:

     See Also as 'help'

_E_x_a_m_p_l_e_s:

