getAnnot            package:BeadExplorer            R Documentation

_G_e_t _a_n_n_o_t_a_t_i_o_n _i_n_f_o_r_m_a_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Obtain annotation information for a given Illumina gene ID

_U_s_a_g_e:

     getAnnot(id, manifest, searchFields = c("Target"), returnFields = "all")

_A_r_g_u_m_e_n_t_s:

      id: A character or vector corresponding to the Illumina gene
          ID(s) 

manifest: A 'data.frame' of manifest data as produced by 'readManifest' 

searchFields: The manifest column name to search for ID

returnFields: The manifest column names to return, use "all" to return
          all columns 

_D_e_t_a_i_l_s:

     Obtain annotation information for a given Illumina gene ID(s)

_V_a_l_u_e:

     A 'data.frame' containing annotation information for a given gene
     ID(s).

_A_u_t_h_o_r(_s):

     Gareth Elvidge gareth.elvidge@well.ox.ac.uk

_S_e_e _A_l_s_o:

     See Also as 'help', 'readManifest'

_E_x_a_m_p_l_e_s:

     ## Not run: 
     man<-readManifest("d:\Bead_Set_Manifest\Human_WG-6.csv")
     getAnnot("GI_23097300-A", man)
     getAnnot(c("GI_23097300-A", "GI_21070955-A", "GI_4505876-A"), man)

     # search for the gene symbol "NDRG1" in the "Symbol" column of the manifest file
     getAnnot("NDRG1", man, searchFields="Symbol")
     ## End(Not run)

