dotplotQC            package:BeadExplorer            R Documentation

_P_l_o_t _a _s_u_b_s_e_t _o_f _Q_C _d_o_t_p_l_o_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Plots a series of dotplots for a BeadChip QC data

_U_s_a_g_e:

     dotplotQC(beadData, beadQC, qc, subset, col = NULL, currentcol = "black", meansym = 4, arraysym = 19, currentsym = 19, 
     meansize = 1.5, arraysize = 1.5, currentsize = 1.5, ...)

_A_r_g_u_m_e_n_t_s:

beadData: Object of class 'beadData-class'  

  beadQC: Object of class 'beadQC-class'  

      qc: 'data.frame' created by 'readQC'

  subset: A numerical vector, denoting the columns of QC to plot 

     col: A vector of colours used to plot each array type 

currentcol: The colour used to identify the current analysis  

 meansym: The symbol used to identify the mean  

arraysym: The symbol used to identify the each analysis 

currentsym: The symbol used to identify the current analysis 

meansize: The size of the symbol used to identify the mean 

arraysize: The size of the symbol used to identify each analysis 

currentsize: The size of the symbol used to identify the current
          analysis 

     ...: Arguments passed to 'points'

_D_e_t_a_i_l_s:

     This function is primarily an internal function and should not
     need to be called by the user.  The function is used to plot each 
     indivdual dotplot graph by 'dotplotArrays'.

_V_a_l_u_e:

     None

_A_u_t_h_o_r(_s):

     Gareth Elvidge gareth.elvidge@well.ox.ac.uk

_S_e_e _A_l_s_o:

     'dotplotArrays', 'boxplotArrays','boxplotQC'

_E_x_a_m_p_l_e_s:

     ## Not run: 
     data(examplebeadData)
     data(examplebeadQC)
     data(exampleQC)
     boxplotQC(examplebeadData, examplebeadQC, exampleQC,subset=c(1,4,3,2))
     ## End(Not run)

