cutoff             package:BeadExplorer             R Documentation

_D_e_t_e_r_m_i_n_e _t_h_e _n_u_m_b_e_r _o_f _t_r_a_n_s_c_r_i_p_t_s _t_h_a_t _p_a_s_s _a _f_o_l_d _c_h_a_n_g_e _c_u_t-_o_f_f _c_r_i_t_e_r_i_a

_D_e_s_c_r_i_p_t_i_o_n:

     Determine the number of transcripts that pass a fold change
     cut-off criteria

_U_s_a_g_e:

     cutoff(beadData, fold)

_A_r_g_u_m_e_n_t_s:

beadData: An object of class 'beadData-class' 

    fold: A fold change to use as a cut-off

_D_e_t_a_i_l_s:

     Determines the number of transcripts that are greater than a
     cut-off fold-change (up-regulated, down-regulated or up and down
     regulated).  The results are produced for all pairwise comparisons
     of samples in the 'beadData-class' object

_V_a_l_u_e:

     Results of matrix-like objects are outputted to the console

_A_u_t_h_o_r(_s):

     Gareth Elvidge gareth.elvidge@well.ox.ac.uk

_S_e_e _A_l_s_o:

     See Also as 'help'

_E_x_a_m_p_l_e_s:

     #Determine the number of transcripts that show greater than 3 fold differential regulation
     data(examplebeadData)
     cutoff (examplebeadData,3)

