batchAnalysis          package:BeadExplorer          R Documentation

_B_a_t_c_h _A_n_a_l_y_s_i_s

_D_e_s_c_r_i_p_t_i_o_n:

     Batch analysis of Illumina BeadStudio V1 output files

_U_s_a_g_e:

     batchAnalysis(bkd = "Offset", offset = NULL, method = "Quantile")

_A_r_g_u_m_e_n_t_s:

     bkd: A character spcificying the background adjustment method. 
          Options are "Offset" or "Base"

  offset: A numeric specifiying the offset value to add

  method: A character specifying a normalisation option.  Options are
          "Quantile", "Qspline", "RobustQuantile"

_D_e_t_a_i_l_s:

     This is a wrapper function that looks for all files within the
     current working directory that end in 'gene profile.csv' and
     analyses them in series.  The corresponding 'qcinfo.csv' files 
     are also required within the working directory.  The function
     basically repeats the default 'beadAnalysis' function for every
     file in the directory.  This function can currently only be used
     for files generated by BeadStudio version 1.

_V_a_l_u_e:

     None

_A_u_t_h_o_r(_s):

     Gareth Elvidge gareth.elvidge@well.ox.ac.uk

_E_x_a_m_p_l_e_s:

     ## Not run: 
     batchAnalysis()
     ## End(Not run)

